Protein–RNA interactions for Protein: Q9BRK5

SDF4, 45 kDa calcium-binding protein, humanhuman

Predictions only

Length 362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4Q9BRK5 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 PCDHB18P-201ENST00000524813 2368 ntBASIC21.22■□□□□ 0.99
SDF4Q9BRK5 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 FAM8A6P-201ENST00000407496 1135 ntBASIC21.22■□□□□ 0.99
SDF4Q9BRK5 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 AL441883.1-201ENST00000566170 1045 ntBASIC21.22■□□□□ 0.99
SDF4Q9BRK5 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 AC068880.1-201ENST00000507289 2297 ntBASIC21.22■□□□□ 0.99
SDF4Q9BRK5 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SDF4Q9BRK5 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 MED25-212ENST00000618715 1467 ntTSL 5 BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 MTMR9LP-203ENST00000426597 1545 ntBASIC21.21■□□□□ 0.99
SDF4Q9BRK5 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 HOMER2P1-201ENST00000455653 964 ntBASIC21.21■□□□□ 0.99
SDF4Q9BRK5 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 MIR3180-5-201ENST00000583743 153 ntBASIC21.21■□□□□ 0.99
SDF4Q9BRK5 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 AC036111.1-201ENST00000533973 1582 ntBASIC21.21■□□□□ 0.99
SDF4Q9BRK5 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
SDF4Q9BRK5 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
SDF4Q9BRK5 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 OR6D1P-202ENST00000641007 5290 ntBASIC21.2■□□□□ 0.98
SDF4Q9BRK5 COPE-203ENST00000351079 907 ntTSL 2 BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 GAD2-202ENST00000376248 680 ntTSL 5 BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 TPM1-226ENST00000560959 925 ntTSL 2 BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 AC068587.9-201ENST00000641814 219 ntBASIC21.2■□□□□ 0.98
SDF4Q9BRK5 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDF4Q9BRK5 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.19■□□□□ 0.98
SDF4Q9BRK5 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC21.19■□□□□ 0.98
SDF4Q9BRK5 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SDF4Q9BRK5 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
SDF4Q9BRK5 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC21.19■□□□□ 0.98
SDF4Q9BRK5 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.19■□□□□ 0.98
SDF4Q9BRK5 AL162741.1-201ENST00000565563 1558 ntBASIC21.19■□□□□ 0.98
SDF4Q9BRK5 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SDF4Q9BRK5 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms