Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AP000523.1-201ENST00000398242 1049 ntBASIC17.49■□□□□ 0.39
VMP1Q96GC9 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VMP1Q96GC9 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VMP1Q96GC9 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VMP1Q96GC9 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.49■□□□□ 0.39
VMP1Q96GC9 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.49■□□□□ 0.39
VMP1Q96GC9 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.49■□□□□ 0.39
VMP1Q96GC9 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
VMP1Q96GC9 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.49■□□□□ 0.39
VMP1Q96GC9 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.49■□□□□ 0.39
VMP1Q96GC9 AL512353.2-201ENST00000448759 1962 ntBASIC17.49■□□□□ 0.39
VMP1Q96GC9 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
VMP1Q96GC9 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VMP1Q96GC9 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VMP1Q96GC9 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VMP1Q96GC9 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
VMP1Q96GC9 AC093525.10-201ENST00000625130 1569 ntBASIC17.49■□□□□ 0.39
VMP1Q96GC9 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 COX11P1-201ENST00000489116 835 ntBASIC17.48■□□□□ 0.39
VMP1Q96GC9 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 WWOX-216ENST00000569818 525 ntBASIC17.48■□□□□ 0.39
VMP1Q96GC9 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 CR769767.2-201ENST00000622735 460 ntBASIC17.48■□□□□ 0.39
VMP1Q96GC9 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 Z98044.1-201ENST00000632503 1764 ntBASIC17.48■□□□□ 0.39
VMP1Q96GC9 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.48■□□□□ 0.39
VMP1Q96GC9 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VMP1Q96GC9 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VMP1Q96GC9 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
VMP1Q96GC9 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VMP1Q96GC9 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VMP1Q96GC9 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VMP1Q96GC9 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VMP1Q96GC9 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VMP1Q96GC9 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VMP1Q96GC9 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VMP1Q96GC9 MIR1224-201ENST00000408193 85 ntBASIC17.47■□□□□ 0.39
VMP1Q96GC9 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 AL049597.2-201ENST00000565575 961 ntBASIC17.47■□□□□ 0.39
VMP1Q96GC9 MIR3180-5-201ENST00000583743 153 ntBASIC17.47■□□□□ 0.39
VMP1Q96GC9 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 AL031432.5-201ENST00000641059 760 ntBASIC17.47■□□□□ 0.39
VMP1Q96GC9 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VMP1Q96GC9 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
VMP1Q96GC9 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VMP1Q96GC9 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VMP1Q96GC9 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms