Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TTC28Q96AY4 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.4■□□□□ 0.54
TTC28Q96AY4 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TTC28Q96AY4 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TTC28Q96AY4 AC140878.1-201ENST00000565277 250 ntBASIC18.4■□□□□ 0.54
TTC28Q96AY4 BCAR1-209ENST00000546196 1340 ntBASIC18.4■□□□□ 0.54
TTC28Q96AY4 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TTC28Q96AY4 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.4■□□□□ 0.54
TTC28Q96AY4 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TTC28Q96AY4 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.4■□□□□ 0.54
TTC28Q96AY4 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.4■□□□□ 0.54
TTC28Q96AY4 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TTC28Q96AY4 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC18.4■□□□□ 0.54
TTC28Q96AY4 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC18.4■□□□□ 0.54
TTC28Q96AY4 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.4■□□□□ 0.54
TTC28Q96AY4 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.4■□□□□ 0.54
TTC28Q96AY4 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC18.4■□□□□ 0.54
TTC28Q96AY4 AP001059.3-201ENST00000619053 235 ntBASIC18.4■□□□□ 0.54
TTC28Q96AY4 REM2-202ENST00000536884 1331 ntTSL 2 BASIC18.4■□□□□ 0.54
TTC28Q96AY4 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
TTC28Q96AY4 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.4■□□□□ 0.54
TTC28Q96AY4 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TTC28Q96AY4 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.39■□□□□ 0.54
TTC28Q96AY4 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
TTC28Q96AY4 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TTC28Q96AY4 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TTC28Q96AY4 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TTC28Q96AY4 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
TTC28Q96AY4 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TTC28Q96AY4 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TTC28Q96AY4 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TTC28Q96AY4 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TTC28Q96AY4 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
TTC28Q96AY4 ELK2AP-201ENST00000392510 1007 ntBASIC18.39■□□□□ 0.53
TTC28Q96AY4 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC18.39■□□□□ 0.53
TTC28Q96AY4 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.39■□□□□ 0.53
TTC28Q96AY4 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.39■□□□□ 0.53
TTC28Q96AY4 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.39■□□□□ 0.53
TTC28Q96AY4 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC18.39■□□□□ 0.53
TTC28Q96AY4 KRT8P50-201ENST00000562022 1438 ntBASIC18.39■□□□□ 0.53
TTC28Q96AY4 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.39■□□□□ 0.53
TTC28Q96AY4 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
TTC28Q96AY4 AL390754.1-201ENST00000619088 582 ntBASIC18.39■□□□□ 0.53
TTC28Q96AY4 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TTC28Q96AY4 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC18.39■□□□□ 0.53
TTC28Q96AY4 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TTC28Q96AY4 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TTC28Q96AY4 AC233723.2-201ENST00000623798 2106 ntBASIC18.39■□□□□ 0.53
TTC28Q96AY4 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
TTC28Q96AY4 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.39■□□□□ 0.53
TTC28Q96AY4 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TTC28Q96AY4 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TTC28Q96AY4 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
TTC28Q96AY4 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
TTC28Q96AY4 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.39■□□□□ 0.53
TTC28Q96AY4 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.39■□□□□ 0.53
TTC28Q96AY4 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.39■□□□□ 0.53
TTC28Q96AY4 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TTC28Q96AY4 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TTC28Q96AY4 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC18.38■□□□□ 0.53
TTC28Q96AY4 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TTC28Q96AY4 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TTC28Q96AY4 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.38■□□□□ 0.53
TTC28Q96AY4 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
TTC28Q96AY4 AC079776.1-201ENST00000401540 1152 ntBASIC18.38■□□□□ 0.53
TTC28Q96AY4 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TTC28Q96AY4 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.38■□□□□ 0.53
TTC28Q96AY4 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC18.38■□□□□ 0.53
TTC28Q96AY4 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.38■□□□□ 0.53
TTC28Q96AY4 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC18.38■□□□□ 0.53
TTC28Q96AY4 IGHV3-65-201ENST00000523210 341 ntBASIC18.38■□□□□ 0.53
TTC28Q96AY4 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TTC28Q96AY4 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.38■□□□□ 0.53
TTC28Q96AY4 AC068137.2-201ENST00000605408 478 ntBASIC18.38■□□□□ 0.53
TTC28Q96AY4 SPTSSB-204ENST00000617024 1292 ntBASIC18.38■□□□□ 0.53
TTC28Q96AY4 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TTC28Q96AY4 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.38■□□□□ 0.53
TTC28Q96AY4 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
TTC28Q96AY4 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TTC28Q96AY4 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.38■□□□□ 0.53
TTC28Q96AY4 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TTC28Q96AY4 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.38■□□□□ 0.53
TTC28Q96AY4 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TTC28Q96AY4 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
TTC28Q96AY4 MIR4525-201ENST00000580000 75 ntBASIC18.38■□□□□ 0.53
TTC28Q96AY4 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.38■□□□□ 0.53
TTC28Q96AY4 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.38■□□□□ 0.53
TTC28Q96AY4 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
TTC28Q96AY4 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
TTC28Q96AY4 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TTC28Q96AY4 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
TTC28Q96AY4 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TTC28Q96AY4 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.37■□□□□ 0.53
TTC28Q96AY4 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.37■□□□□ 0.53
TTC28Q96AY4 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TTC28Q96AY4 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
TTC28Q96AY4 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TTC28Q96AY4 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TTC28Q96AY4 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.37■□□□□ 0.53
TTC28Q96AY4 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms