Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 AL353807.1-201ENST00000427475 662 ntBASIC17.56■□□□□ 0.4
VPS33AQ96AX1 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 B3GAT3P1-201ENST00000471720 806 ntBASIC17.56■□□□□ 0.4
VPS33AQ96AX1 AF186192.3-201ENST00000583427 947 ntBASIC17.56■□□□□ 0.4
VPS33AQ96AX1 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 MIR6786-201ENST00000616843 113 ntBASIC17.56■□□□□ 0.4
VPS33AQ96AX1 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS33AQ96AX1 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 GPAT2P1-201ENST00000444924 1672 ntBASIC17.55■□□□□ 0.4
VPS33AQ96AX1 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 AL023284.2-201ENST00000405850 579 ntBASIC17.55■□□□□ 0.4
VPS33AQ96AX1 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 C1QBPP2-201ENST00000528754 825 ntBASIC17.55■□□□□ 0.4
VPS33AQ96AX1 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS33AQ96AX1 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.55■□□□□ 0.4
VPS33AQ96AX1 KRT8P50-201ENST00000562022 1438 ntBASIC17.55■□□□□ 0.4
VPS33AQ96AX1 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 AP000593.1-201ENST00000393668 712 ntBASIC17.54■□□□□ 0.4
VPS33AQ96AX1 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 AC106820.2-201ENST00000563775 3264 ntBASIC17.54■□□□□ 0.4
VPS33AQ96AX1 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
VPS33AQ96AX1 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS33AQ96AX1 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
VPS33AQ96AX1 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS33AQ96AX1 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS33AQ96AX1 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
VPS33AQ96AX1 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
VPS33AQ96AX1 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS33AQ96AX1 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS33AQ96AX1 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS33AQ96AX1 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS33AQ96AX1 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS33AQ96AX1 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS33AQ96AX1 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS33AQ96AX1 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS33AQ96AX1 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS33AQ96AX1 MESTP1-201ENST00000404287 994 ntBASIC17.53■□□□□ 0.4
VPS33AQ96AX1 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS33AQ96AX1 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS33AQ96AX1 AC073195.1-201ENST00000607241 877 ntBASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms