Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.72■□□□□ 0.91
ERCC4Q92889 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC4Q92889 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC4Q92889 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC4Q92889 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.72■□□□□ 0.91
ERCC4Q92889 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC4Q92889 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC4Q92889 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC20.72■□□□□ 0.91
ERCC4Q92889 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC4Q92889 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ERCC4Q92889 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ERCC4Q92889 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
ERCC4Q92889 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
ERCC4Q92889 AC012317.2-201ENST00000623305 2251 ntBASIC20.71■□□□□ 0.91
ERCC4Q92889 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
ERCC4Q92889 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ERCC4Q92889 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC20.71■□□□□ 0.91
ERCC4Q92889 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.71■□□□□ 0.91
ERCC4Q92889 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
ERCC4Q92889 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ERCC4Q92889 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ERCC4Q92889 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
ERCC4Q92889 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ERCC4Q92889 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
ERCC4Q92889 MCCD1P1-208ENST00000445732 328 ntBASIC20.71■□□□□ 0.91
ERCC4Q92889 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.71■□□□□ 0.91
ERCC4Q92889 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.71■□□□□ 0.91
ERCC4Q92889 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
ERCC4Q92889 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.71■□□□□ 0.91
ERCC4Q92889 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.71■□□□□ 0.91
ERCC4Q92889 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ERCC4Q92889 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.71■□□□□ 0.91
ERCC4Q92889 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.71■□□□□ 0.91
ERCC4Q92889 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
ERCC4Q92889 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.71■□□□□ 0.91
ERCC4Q92889 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ERCC4Q92889 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC20.71■□□□□ 0.91
ERCC4Q92889 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
ERCC4Q92889 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ERCC4Q92889 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ERCC4Q92889 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
ERCC4Q92889 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
ERCC4Q92889 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
ERCC4Q92889 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
ERCC4Q92889 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.7■□□□□ 0.9
ERCC4Q92889 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.7■□□□□ 0.9
ERCC4Q92889 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ERCC4Q92889 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ERCC4Q92889 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ERCC4Q92889 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
ERCC4Q92889 AL158047.1-201ENST00000445918 881 ntBASIC20.7■□□□□ 0.9
ERCC4Q92889 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ERCC4Q92889 AC116562.2-201ENST00000507042 360 ntBASIC20.7■□□□□ 0.9
ERCC4Q92889 AC097488.1-201ENST00000507834 756 ntBASIC20.7■□□□□ 0.9
ERCC4Q92889 NUDT16P1-203ENST00000513809 620 ntBASIC20.7■□□□□ 0.9
ERCC4Q92889 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.7■□□□□ 0.9
ERCC4Q92889 AC142381.4-202ENST00000563973 229 ntBASIC20.7■□□□□ 0.9
ERCC4Q92889 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.7■□□□□ 0.9
ERCC4Q92889 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.7■□□□□ 0.9
ERCC4Q92889 AC113410.3-201ENST00000623366 203 ntBASIC20.7■□□□□ 0.9
ERCC4Q92889 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ERCC4Q92889 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.7■□□□□ 0.9
ERCC4Q92889 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.7■□□□□ 0.9
ERCC4Q92889 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
ERCC4Q92889 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC20.7■□□□□ 0.9
ERCC4Q92889 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ERCC4Q92889 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ERCC4Q92889 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
ERCC4Q92889 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.7■□□□□ 0.9
ERCC4Q92889 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.7■□□□□ 0.9
ERCC4Q92889 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
ERCC4Q92889 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
ERCC4Q92889 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.7■□□□□ 0.9
ERCC4Q92889 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.69■□□□□ 0.9
ERCC4Q92889 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.69■□□□□ 0.9
ERCC4Q92889 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ERCC4Q92889 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ERCC4Q92889 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.69■□□□□ 0.9
ERCC4Q92889 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ERCC4Q92889 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
ERCC4Q92889 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.69■□□□□ 0.9
ERCC4Q92889 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ERCC4Q92889 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ERCC4Q92889 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.69■□□□□ 0.9
ERCC4Q92889 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.69■□□□□ 0.9
ERCC4Q92889 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
ERCC4Q92889 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ERCC4Q92889 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ERCC4Q92889 REXO1L10P-201ENST00000615707 1290 ntBASIC20.69■□□□□ 0.9
ERCC4Q92889 REXO1L12P-201ENST00000622156 912 ntBASIC20.69■□□□□ 0.9
ERCC4Q92889 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
ERCC4Q92889 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC20.69■□□□□ 0.9
ERCC4Q92889 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ERCC4Q92889 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ERCC4Q92889 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
ERCC4Q92889 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ERCC4Q92889 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
ERCC4Q92889 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
ERCC4Q92889 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ERCC4Q92889 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms