Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 GAPDHP21-201ENST00000450301 1010 ntBASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 AC087641.1-201ENST00000557561 1021 ntBASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 SDCCAG3P1-201ENST00000589292 1150 ntBASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 AQP6-205ENST00000618286 829 ntTSL 5 BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 AL022326.1-202ENST00000641533 845 ntBASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 HLA-DRB6-201ENST00000411500 1235 ntBASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 MTCL1P1-201ENST00000446207 792 ntBASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 LINC01521-201ENST00000504184 1943 ntBASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 GOLGA6L17P-202ENST00000614358 1398 ntBASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.56■■□□□ 1.04
SMC1BQ8NDV3 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 BX005266.1-201ENST00000473402 457 ntBASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 AC004835.2-201ENST00000603762 682 ntBASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC21.55■■□□□ 1.04
SMC1BQ8NDV3 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 MRPL20P1-201ENST00000400819 433 ntBASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 ACTG1P14-201ENST00000446382 1122 ntBASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 SERF2-217ENST00000630046 862 ntTSL 5 BASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC21.54■■□□□ 1.04
SMC1BQ8NDV3 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 AL357033.4-201ENST00000617703 1807 ntBASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 CCDC74BP1-201ENST00000508880 1123 ntBASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms