Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.29■□□□□ 0.52
HDDC3Q8N4P3 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 AC113404.2-201ENST00000507884 177 ntBASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 AP005901.3-202ENST00000581653 237 ntBASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 AC139530.3-201ENST00000620344 690 ntBASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 AL024508.2-201ENST00000607749 1894 ntBASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 NSUN5P1-202ENST00000421140 1535 ntBASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 NSUN5P2-203ENST00000457352 1529 ntBASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HDDC3Q8N4P3 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 HLA-A-201ENST00000376802 1334 ntBASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 TSPY12P-201ENST00000421279 868 ntBASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 MINOS1P3-201ENST00000457048 203 ntBASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HDDC3Q8N4P3 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.51
HDDC3Q8N4P3 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.27■□□□□ 0.51
HDDC3Q8N4P3 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.27■□□□□ 0.51
HDDC3Q8N4P3 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.51
HDDC3Q8N4P3 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
HDDC3Q8N4P3 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
HDDC3Q8N4P3 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.27■□□□□ 0.51
HDDC3Q8N4P3 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
HDDC3Q8N4P3 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 ANO7L1-203ENST00000602586 1720 ntBASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HDDC3Q8N4P3 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HDDC3Q8N4P3 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms