Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 PVRIG2P-201ENST00000435460 978 ntBASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 AL441883.1-201ENST00000566170 1045 ntBASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 AC139887.4-201ENST00000607877 719 ntBASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 REXO1L9P-201ENST00000604264 2108 ntBASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 HTR7P1-202ENST00000624664 4411 ntBASIC20.27■□□□□ 0.84
CCDC65Q8IXS2 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC65Q8IXS2 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC65Q8IXS2 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 NOC2LP1-202ENST00000452600 2235 ntBASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 KRT18P57-201ENST00000443599 1254 ntBASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 YBX1P2-201ENST00000489612 999 ntBASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 AC011558.1-201ENST00000623459 338 ntBASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC65Q8IXS2 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC65Q8IXS2 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 AC117947.1-201ENST00000427448 529 ntBASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 RASA4DP-201ENST00000460726 1199 ntBASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 AC008687.5-201ENST00000593746 558 ntBASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC65Q8IXS2 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC65Q8IXS2 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms