Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 TPRG1LP1-201ENST00000598702 760 ntBASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 AC120498.10-201ENST00000621827 505 ntBASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 KRT87P-202ENST00000534226 1464 ntBASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 AC068587.6-202ENST00000641839 5619 ntBASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 AC022188.1-201ENST00000620960 1664 ntBASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28AQ8IWP9 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 LYSMD4-203ENST00000378904 2122 ntBASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 AC123595.1-201ENST00000440769 1046 ntBASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 LGR4-203ENST00000480977 492 ntTSL 2 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28AQ8IWP9 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms