Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
LINC00643Q86TS7 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
LINC00643Q86TS7 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC11.4□□□□□ -0.59
LINC00643Q86TS7 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.59
LINC00643Q86TS7 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
LINC00643Q86TS7 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
LINC00643Q86TS7 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
LINC00643Q86TS7 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
LINC00643Q86TS7 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
LINC00643Q86TS7 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.59
LINC00643Q86TS7 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
LINC00643Q86TS7 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 AC006449.5-201ENST00000610658 2098 ntBASIC11.39□□□□□ -0.59
LINC00643Q86TS7 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 ZNF815P-204ENST00000434898 1737 ntBASIC11.39□□□□□ -0.59
LINC00643Q86TS7 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00643Q86TS7 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 CA12-203ENST00000422263 2556 ntTSL 2 BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 FEM1AP3-201ENST00000403722 1741 ntBASIC11.38□□□□□ -0.59
LINC00643Q86TS7 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 KRT18P24-201ENST00000344739 1156 ntBASIC11.38□□□□□ -0.59
LINC00643Q86TS7 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 OR2I1P-207ENST00000453522 948 ntBASIC11.38□□□□□ -0.59
LINC00643Q86TS7 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 GOLGA8DP-202ENST00000341390 2184 ntBASIC11.38□□□□□ -0.59
LINC00643Q86TS7 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC11.38□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms