Protein–RNA interactions for Protein: Q502W7

CCDC38, Coiled-coil domain-containing protein 38, humanhuman

Predictions only

Length 563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC38Q502W7 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC38Q502W7 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
CCDC38Q502W7 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC38Q502W7 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.94■□□□□ 0.62
CCDC38Q502W7 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC38Q502W7 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC38Q502W7 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC38Q502W7 AC116562.2-201ENST00000507042 360 ntBASIC18.94■□□□□ 0.62
CCDC38Q502W7 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC38Q502W7 SLC25A1P4-201ENST00000567977 778 ntBASIC18.94■□□□□ 0.62
CCDC38Q502W7 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
CCDC38Q502W7 REXO1L10P-201ENST00000615707 1290 ntBASIC18.94■□□□□ 0.62
CCDC38Q502W7 REXO1L12P-201ENST00000622156 912 ntBASIC18.94■□□□□ 0.62
CCDC38Q502W7 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC38Q502W7 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC38Q502W7 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC38Q502W7 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC38Q502W7 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC38Q502W7 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC38Q502W7 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CCDC38Q502W7 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
CCDC38Q502W7 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC38Q502W7 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC38Q502W7 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC38Q502W7 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC38Q502W7 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC38Q502W7 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.94■□□□□ 0.62
CCDC38Q502W7 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC38Q502W7 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.93■□□□□ 0.62
CCDC38Q502W7 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC38Q502W7 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CCDC38Q502W7 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC38Q502W7 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.93■□□□□ 0.62
CCDC38Q502W7 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC38Q502W7 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC38Q502W7 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.93■□□□□ 0.62
CCDC38Q502W7 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC38Q502W7 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
CCDC38Q502W7 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.93■□□□□ 0.62
CCDC38Q502W7 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.93■□□□□ 0.62
CCDC38Q502W7 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.93■□□□□ 0.62
CCDC38Q502W7 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.93■□□□□ 0.62
CCDC38Q502W7 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.93■□□□□ 0.62
CCDC38Q502W7 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC38Q502W7 AC008550.1-201ENST00000511500 884 ntBASIC18.93■□□□□ 0.62
CCDC38Q502W7 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.93■□□□□ 0.62
CCDC38Q502W7 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC38Q502W7 AP001412.1-201ENST00000608405 714 ntBASIC18.93■□□□□ 0.62
CCDC38Q502W7 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC38Q502W7 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC38Q502W7 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC38Q502W7 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.93■□□□□ 0.62
CCDC38Q502W7 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CCDC38Q502W7 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC38Q502W7 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC38Q502W7 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 GNAS-203ENST00000306120 1878 ntBASIC18.92■□□□□ 0.62
CCDC38Q502W7 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC38Q502W7 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC38Q502W7 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC38Q502W7 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC38Q502W7 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC38Q502W7 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC38Q502W7 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC38Q502W7 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC38Q502W7 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC38Q502W7 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 AL355355.2-201ENST00000442321 338 ntBASIC18.92■□□□□ 0.62
CCDC38Q502W7 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 AC026471.5-201ENST00000615068 467 ntBASIC18.92■□□□□ 0.62
CCDC38Q502W7 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC38Q502W7 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC38Q502W7 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 AC009053.2-201ENST00000563701 2365 ntBASIC18.92■□□□□ 0.62
CCDC38Q502W7 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC38Q502W7 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC38Q502W7 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC38Q502W7 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC38Q502W7 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC38Q502W7 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms