Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC068472.1-201ENST00000474589 881 ntBASIC13□□□□□ -0.33
COL7A1Q02388 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
COL7A1Q02388 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC13□□□□□ -0.33
COL7A1Q02388 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC13□□□□□ -0.33
COL7A1Q02388 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC13□□□□□ -0.33
COL7A1Q02388 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC13□□□□□ -0.33
COL7A1Q02388 CIPC-205ENST00000555437 566 ntTSL 3 BASIC13□□□□□ -0.33
COL7A1Q02388 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC13□□□□□ -0.33
COL7A1Q02388 RNF151-202ENST00000569210 853 ntTSL 2 BASIC13□□□□□ -0.33
COL7A1Q02388 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC13□□□□□ -0.33
COL7A1Q02388 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC13□□□□□ -0.33
COL7A1Q02388 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC13□□□□□ -0.33
COL7A1Q02388 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC13□□□□□ -0.33
COL7A1Q02388 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 CD82-202ENST00000342935 967 ntTSL 5 BASIC13□□□□□ -0.33
COL7A1Q02388 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC13□□□□□ -0.33
COL7A1Q02388 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC13□□□□□ -0.33
COL7A1Q02388 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
COL7A1Q02388 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC13□□□□□ -0.33
COL7A1Q02388 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC13□□□□□ -0.33
COL7A1Q02388 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC13□□□□□ -0.33
COL7A1Q02388 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC12.99□□□□□ -0.33
COL7A1Q02388 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC12.99□□□□□ -0.33
COL7A1Q02388 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 MIR149-201ENST00000384879 89 ntBASIC12.99□□□□□ -0.33
COL7A1Q02388 GAPDHP21-201ENST00000450301 1010 ntBASIC12.99□□□□□ -0.33
COL7A1Q02388 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC12.99□□□□□ -0.33
COL7A1Q02388 AC136632.2-201ENST00000512891 861 ntBASIC12.99□□□□□ -0.33
COL7A1Q02388 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC12.99□□□□□ -0.33
COL7A1Q02388 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC12.99□□□□□ -0.33
COL7A1Q02388 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC12.99□□□□□ -0.33
COL7A1Q02388 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC12.99□□□□□ -0.33
COL7A1Q02388 AC009154.2-201ENST00000621177 724 ntBASIC12.99□□□□□ -0.33
COL7A1Q02388 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC12.99□□□□□ -0.33
COL7A1Q02388 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC12.99□□□□□ -0.33
COL7A1Q02388 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC12.99□□□□□ -0.33
COL7A1Q02388 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC12.99□□□□□ -0.33
COL7A1Q02388 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 AC007274.1-201ENST00000439805 662 ntBASIC12.99□□□□□ -0.33
COL7A1Q02388 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC12.99□□□□□ -0.33
COL7A1Q02388 HCG4B-203ENST00000450128 991 ntBASIC12.99□□□□□ -0.33
COL7A1Q02388 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 TCAP-202ENST00000578283 583 ntTSL 5 BASIC12.99□□□□□ -0.33
COL7A1Q02388 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC12.99□□□□□ -0.33
COL7A1Q02388 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC12.99□□□□□ -0.33
COL7A1Q02388 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
COL7A1Q02388 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 AL499627.1-201ENST00000569373 2188 ntBASIC12.99□□□□□ -0.33
COL7A1Q02388 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
COL7A1Q02388 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC12.99□□□□□ -0.33
COL7A1Q02388 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC12.99□□□□□ -0.33
COL7A1Q02388 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL7A1Q02388 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC12.98□□□□□ -0.33
COL7A1Q02388 AL049812.1-201ENST00000432563 2267 ntBASIC12.98□□□□□ -0.33
COL7A1Q02388 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL7A1Q02388 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL7A1Q02388 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL7A1Q02388 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms