Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RPL39P62891 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
RPL39P62891 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
RPL39P62891 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
RPL39P62891 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RPL39P62891 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
RPL39P62891 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
RPL39P62891 AC099343.3-201ENST00000605834 2503 ntBASIC12.93□□□□□ -0.34
RPL39P62891 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RPL39P62891 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RPL39P62891 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC12.93□□□□□ -0.34
RPL39P62891 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
RPL39P62891 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RPL39P62891 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
RPL39P62891 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC12.93□□□□□ -0.34
RPL39P62891 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC12.92□□□□□ -0.34
RPL39P62891 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
RPL39P62891 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC12.92□□□□□ -0.34
RPL39P62891 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC12.92□□□□□ -0.34
RPL39P62891 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC12.92□□□□□ -0.34
RPL39P62891 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC12.92□□□□□ -0.34
RPL39P62891 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 NBPF21P-201ENST00000425093 1451 ntBASIC12.92□□□□□ -0.34
RPL39P62891 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC12.92□□□□□ -0.34
RPL39P62891 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
RPL39P62891 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
RPL39P62891 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC12.92□□□□□ -0.34
RPL39P62891 PPP1R14BP2-201ENST00000426284 444 ntBASIC12.92□□□□□ -0.34
RPL39P62891 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC12.92□□□□□ -0.34
RPL39P62891 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC12.92□□□□□ -0.34
RPL39P62891 Z85996.1-201ENST00000494644 937 ntBASIC12.92□□□□□ -0.34
RPL39P62891 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC12.92□□□□□ -0.34
RPL39P62891 MYC-209ENST00000641252 345 ntBASIC12.92□□□□□ -0.34
RPL39P62891 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC12.92□□□□□ -0.34
RPL39P62891 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC12.92□□□□□ -0.34
RPL39P62891 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC12.92□□□□□ -0.34
RPL39P62891 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC12.92□□□□□ -0.34
RPL39P62891 FER1L4-210ENST00000615531 5998 ntBASIC12.92□□□□□ -0.34
RPL39P62891 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPL39P62891 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RPL39P62891 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RPL39P62891 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RPL39P62891 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
RPL39P62891 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RPL39P62891 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RPL39P62891 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
RPL39P62891 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RPL39P62891 HTR7P1-201ENST00000538670 1336 ntBASIC12.91□□□□□ -0.34
RPL39P62891 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RPL39P62891 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC12.91□□□□□ -0.34
RPL39P62891 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
RPL39P62891 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
RPL39P62891 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RPL39P62891 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
RPL39P62891 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RPL39P62891 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RPL39P62891 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RPL39P62891 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.34
RPL39P62891 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC12.91□□□□□ -0.34
RPL39P62891 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RPL39P62891 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
RPL39P62891 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
RPL39P62891 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC12.91□□□□□ -0.34
RPL39P62891 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RPL39P62891 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RPL39P62891 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RPL39P62891 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
RPL39P62891 SLC29A4P1-201ENST00000398760 971 ntBASIC12.91□□□□□ -0.34
RPL39P62891 AC026271.2-201ENST00000428091 497 ntBASIC12.91□□□□□ -0.34
RPL39P62891 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
RPL39P62891 CROCCP5-201ENST00000436658 830 ntBASIC12.91□□□□□ -0.34
RPL39P62891 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RPL39P62891 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC12.91□□□□□ -0.34
RPL39P62891 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC12.91□□□□□ -0.34
RPL39P62891 THEM4-205ENST00000489410 643 ntTSL 2 BASIC12.91□□□□□ -0.34
RPL39P62891 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms