Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLDN6P56747 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CLDN6P56747 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CLDN6P56747 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.48■□□□□ 0.39
CLDN6P56747 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN6P56747 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.48■□□□□ 0.39
CLDN6P56747 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.48■□□□□ 0.39
CLDN6P56747 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CLDN6P56747 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN6P56747 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN6P56747 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN6P56747 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.48■□□□□ 0.39
CLDN6P56747 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CLDN6P56747 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN6P56747 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CLDN6P56747 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN6P56747 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
CLDN6P56747 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.48■□□□□ 0.39
CLDN6P56747 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.48■□□□□ 0.39
CLDN6P56747 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.48■□□□□ 0.39
CLDN6P56747 SART3-203ENST00000546611 1184 ntBASIC17.48■□□□□ 0.39
CLDN6P56747 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.48■□□□□ 0.39
CLDN6P56747 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN6P56747 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.48■□□□□ 0.39
CLDN6P56747 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN6P56747 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.48■□□□□ 0.39
CLDN6P56747 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CLDN6P56747 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN6P56747 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN6P56747 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.48■□□□□ 0.39
CLDN6P56747 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN6P56747 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
CLDN6P56747 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CLDN6P56747 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN6P56747 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLDN6P56747 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.47■□□□□ 0.39
CLDN6P56747 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN6P56747 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN6P56747 AL163051.1-201ENST00000569214 1512 ntBASIC17.47■□□□□ 0.39
CLDN6P56747 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.47■□□□□ 0.39
CLDN6P56747 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN6P56747 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN6P56747 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.47■□□□□ 0.39
CLDN6P56747 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
CLDN6P56747 AC141586.3-201ENST00000562166 1838 ntBASIC17.47■□□□□ 0.39
CLDN6P56747 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN6P56747 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN6P56747 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN6P56747 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CLDN6P56747 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.47■□□□□ 0.39
CLDN6P56747 AC092910.1-201ENST00000482027 1129 ntBASIC17.47■□□□□ 0.39
CLDN6P56747 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.47■□□□□ 0.39
CLDN6P56747 AC012640.2-201ENST00000561606 901 ntBASIC17.47■□□□□ 0.39
CLDN6P56747 AC021087.4-201ENST00000563761 564 ntBASIC17.47■□□□□ 0.39
CLDN6P56747 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.47■□□□□ 0.39
CLDN6P56747 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN6P56747 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN6P56747 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.47■□□□□ 0.39
CLDN6P56747 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.47■□□□□ 0.39
CLDN6P56747 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN6P56747 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN6P56747 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN6P56747 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN6P56747 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.47■□□□□ 0.39
CLDN6P56747 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.47■□□□□ 0.39
CLDN6P56747 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN6P56747 MTMR9LP-203ENST00000426597 1545 ntBASIC17.47■□□□□ 0.39
CLDN6P56747 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.47■□□□□ 0.39
CLDN6P56747 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN6P56747 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN6P56747 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.39
CLDN6P56747 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.46■□□□□ 0.39
CLDN6P56747 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN6P56747 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN6P56747 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CLDN6P56747 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN6P56747 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN6P56747 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.46■□□□□ 0.39
CLDN6P56747 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.46■□□□□ 0.39
CLDN6P56747 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.46■□□□□ 0.39
CLDN6P56747 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CLDN6P56747 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.46■□□□□ 0.39
CLDN6P56747 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN6P56747 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.46■□□□□ 0.39
CLDN6P56747 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.46■□□□□ 0.39
CLDN6P56747 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CLDN6P56747 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN6P56747 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN6P56747 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN6P56747 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN6P56747 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN6P56747 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CLDN6P56747 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.46■□□□□ 0.38
CLDN6P56747 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
CLDN6P56747 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLDN6P56747 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLDN6P56747 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLDN6P56747 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.45■□□□□ 0.38
CLDN6P56747 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLDN6P56747 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms