Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LIM2P55344 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.33■□□□□ 0.36
LIM2P55344 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LIM2P55344 AL049597.2-201ENST00000565575 961 ntBASIC17.33■□□□□ 0.36
LIM2P55344 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.33■□□□□ 0.36
LIM2P55344 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.33■□□□□ 0.36
LIM2P55344 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
LIM2P55344 AC079602.3-201ENST00000623931 403 ntBASIC17.33■□□□□ 0.36
LIM2P55344 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
LIM2P55344 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIM2P55344 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIM2P55344 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIM2P55344 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIM2P55344 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
LIM2P55344 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
LIM2P55344 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIM2P55344 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.32■□□□□ 0.36
LIM2P55344 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.32■□□□□ 0.36
LIM2P55344 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
LIM2P55344 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.32■□□□□ 0.36
LIM2P55344 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 AC112907.2-201ENST00000448639 330 ntBASIC17.32■□□□□ 0.36
LIM2P55344 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.32■□□□□ 0.36
LIM2P55344 LINC01238-205ENST00000567549 1107 ntBASIC17.32■□□□□ 0.36
LIM2P55344 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.32■□□□□ 0.36
LIM2P55344 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
LIM2P55344 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.32■□□□□ 0.36
LIM2P55344 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
LIM2P55344 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
LIM2P55344 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIM2P55344 ESPNP-201ENST00000270691 2015 ntBASIC17.31■□□□□ 0.36
LIM2P55344 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIM2P55344 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIM2P55344 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIM2P55344 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.31■□□□□ 0.36
LIM2P55344 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
LIM2P55344 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.31■□□□□ 0.36
LIM2P55344 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIM2P55344 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIM2P55344 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIM2P55344 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIM2P55344 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.31■□□□□ 0.36
LIM2P55344 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.31■□□□□ 0.36
LIM2P55344 AC092597.1-201ENST00000487352 616 ntBASIC17.31■□□□□ 0.36
LIM2P55344 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIM2P55344 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.31■□□□□ 0.36
LIM2P55344 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIM2P55344 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIM2P55344 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
LIM2P55344 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
LIM2P55344 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
LIM2P55344 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIM2P55344 AL391807.1-203ENST00000604392 2365 ntBASIC17.31■□□□□ 0.36
LIM2P55344 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
LIM2P55344 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.31■□□□□ 0.36
LIM2P55344 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIM2P55344 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIM2P55344 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIM2P55344 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.3■□□□□ 0.36
LIM2P55344 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
LIM2P55344 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIM2P55344 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIM2P55344 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LIM2P55344 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
LIM2P55344 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LIM2P55344 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIM2P55344 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIM2P55344 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIM2P55344 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIM2P55344 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.3■□□□□ 0.36
LIM2P55344 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.3■□□□□ 0.36
LIM2P55344 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIM2P55344 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.3■□□□□ 0.36
LIM2P55344 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIM2P55344 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.3■□□□□ 0.36
LIM2P55344 AL136038.4-201ENST00000603606 1261 ntBASIC17.3■□□□□ 0.36
LIM2P55344 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.3■□□□□ 0.36
LIM2P55344 AL162741.1-201ENST00000565563 1558 ntBASIC17.3■□□□□ 0.36
LIM2P55344 AL024508.2-201ENST00000607749 1894 ntBASIC17.3■□□□□ 0.36
LIM2P55344 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIM2P55344 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIM2P55344 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms