Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIG3P49916 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIG3P49916 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIG3P49916 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
LIG3P49916 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC19.19■□□□□ 0.66
LIG3P49916 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIG3P49916 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIG3P49916 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIG3P49916 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIG3P49916 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIG3P49916 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.18■□□□□ 0.66
LIG3P49916 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
LIG3P49916 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
LIG3P49916 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.18■□□□□ 0.66
LIG3P49916 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.18■□□□□ 0.66
LIG3P49916 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.18■□□□□ 0.66
LIG3P49916 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.18■□□□□ 0.66
LIG3P49916 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.18■□□□□ 0.66
LIG3P49916 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.18■□□□□ 0.66
LIG3P49916 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.18■□□□□ 0.66
LIG3P49916 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.18■□□□□ 0.66
LIG3P49916 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.18■□□□□ 0.66
LIG3P49916 C2orf69P3-201ENST00000565542 1120 ntBASIC19.18■□□□□ 0.66
LIG3P49916 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.18■□□□□ 0.66
LIG3P49916 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.18■□□□□ 0.66
LIG3P49916 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
LIG3P49916 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.18■□□□□ 0.66
LIG3P49916 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
LIG3P49916 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.18■□□□□ 0.66
LIG3P49916 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIG3P49916 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.18■□□□□ 0.66
LIG3P49916 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.18■□□□□ 0.66
LIG3P49916 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
LIG3P49916 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
LIG3P49916 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.17■□□□□ 0.66
LIG3P49916 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
LIG3P49916 AC073592.3-201ENST00000625118 1834 ntBASIC19.17■□□□□ 0.66
LIG3P49916 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
LIG3P49916 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
LIG3P49916 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.17■□□□□ 0.66
LIG3P49916 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.17■□□□□ 0.66
LIG3P49916 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.17■□□□□ 0.66
LIG3P49916 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.17■□□□□ 0.66
LIG3P49916 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.17■□□□□ 0.66
LIG3P49916 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.17■□□□□ 0.66
LIG3P49916 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
LIG3P49916 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIG3P49916 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
LIG3P49916 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
LIG3P49916 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
LIG3P49916 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC19.16■□□□□ 0.66
LIG3P49916 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
LIG3P49916 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.16■□□□□ 0.66
LIG3P49916 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.16■□□□□ 0.66
LIG3P49916 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.16■□□□□ 0.66
LIG3P49916 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms