Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.96■□□□□ 0.63
PTPN9P43378 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.96■□□□□ 0.63
PTPN9P43378 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
PTPN9P43378 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.96■□□□□ 0.63
PTPN9P43378 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.96■□□□□ 0.63
PTPN9P43378 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.96■□□□□ 0.63
PTPN9P43378 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
PTPN9P43378 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.96■□□□□ 0.63
PTPN9P43378 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.96■□□□□ 0.63
PTPN9P43378 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.96■□□□□ 0.63
PTPN9P43378 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.96■□□□□ 0.63
PTPN9P43378 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.96■□□□□ 0.63
PTPN9P43378 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.96■□□□□ 0.63
PTPN9P43378 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.96■□□□□ 0.63
PTPN9P43378 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
PTPN9P43378 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.96■□□□□ 0.63
PTPN9P43378 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
PTPN9P43378 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.96■□□□□ 0.63
PTPN9P43378 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.96■□□□□ 0.63
PTPN9P43378 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.96■□□□□ 0.63
PTPN9P43378 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN9P43378 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.95■□□□□ 0.62
PTPN9P43378 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN9P43378 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.95■□□□□ 0.62
PTPN9P43378 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN9P43378 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
PTPN9P43378 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN9P43378 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.95■□□□□ 0.62
PTPN9P43378 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN9P43378 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN9P43378 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN9P43378 LINC00167-201ENST00000530583 1419 ntBASIC18.95■□□□□ 0.62
PTPN9P43378 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.95■□□□□ 0.62
PTPN9P43378 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN9P43378 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN9P43378 MIR662-201ENST00000384847 95 ntBASIC18.95■□□□□ 0.62
PTPN9P43378 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN9P43378 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.95■□□□□ 0.62
PTPN9P43378 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.95■□□□□ 0.62
PTPN9P43378 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.95■□□□□ 0.62
PTPN9P43378 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
PTPN9P43378 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN9P43378 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN9P43378 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN9P43378 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.95■□□□□ 0.62
PTPN9P43378 AC132938.6-201ENST00000623828 1655 ntBASIC18.95■□□□□ 0.62
PTPN9P43378 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.95■□□□□ 0.62
PTPN9P43378 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN9P43378 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN9P43378 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN9P43378 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN9P43378 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN9P43378 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN9P43378 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN9P43378 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN9P43378 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN9P43378 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.94■□□□□ 0.62
PTPN9P43378 KRT18P48-201ENST00000434763 852 ntBASIC18.94■□□□□ 0.62
PTPN9P43378 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN9P43378 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.94■□□□□ 0.62
PTPN9P43378 DUTP2-201ENST00000519164 463 ntBASIC18.94■□□□□ 0.62
PTPN9P43378 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.94■□□□□ 0.62
PTPN9P43378 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.94■□□□□ 0.62
PTPN9P43378 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
PTPN9P43378 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.94■□□□□ 0.62
PTPN9P43378 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.94■□□□□ 0.62
PTPN9P43378 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
PTPN9P43378 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN9P43378 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.94■□□□□ 0.62
PTPN9P43378 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN9P43378 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN9P43378 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN9P43378 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
PTPN9P43378 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN9P43378 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN9P43378 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.93■□□□□ 0.62
PTPN9P43378 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN9P43378 LINC01311-201ENST00000565162 1445 ntBASIC18.93■□□□□ 0.62
PTPN9P43378 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
PTPN9P43378 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN9P43378 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN9P43378 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN9P43378 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.93■□□□□ 0.62
PTPN9P43378 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTPN9P43378 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms