Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLDN9O95484 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.67■□□□□ 0.42
CLDN9O95484 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLDN9O95484 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLDN9O95484 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLDN9O95484 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.67■□□□□ 0.42
CLDN9O95484 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.67■□□□□ 0.42
CLDN9O95484 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CLDN9O95484 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLDN9O95484 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLDN9O95484 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLDN9O95484 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLDN9O95484 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLDN9O95484 HMGA1P5-201ENST00000412453 271 ntBASIC17.67■□□□□ 0.42
CLDN9O95484 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLDN9O95484 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.67■□□□□ 0.42
CLDN9O95484 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.67■□□□□ 0.42
CLDN9O95484 FAM87A-204ENST00000613235 858 ntBASIC17.67■□□□□ 0.42
CLDN9O95484 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLDN9O95484 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLDN9O95484 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CLDN9O95484 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CLDN9O95484 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLDN9O95484 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLDN9O95484 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.67■□□□□ 0.42
CLDN9O95484 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CLDN9O95484 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.67■□□□□ 0.42
CLDN9O95484 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLDN9O95484 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLDN9O95484 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CLDN9O95484 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLDN9O95484 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.66■□□□□ 0.42
CLDN9O95484 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.66■□□□□ 0.42
CLDN9O95484 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.66■□□□□ 0.42
CLDN9O95484 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
CLDN9O95484 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.66■□□□□ 0.42
CLDN9O95484 AC009947.2-201ENST00000444014 672 ntBASIC17.66■□□□□ 0.42
CLDN9O95484 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.66■□□□□ 0.42
CLDN9O95484 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.66■□□□□ 0.42
CLDN9O95484 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CLDN9O95484 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CLDN9O95484 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLDN9O95484 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLDN9O95484 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.65■□□□□ 0.42
CLDN9O95484 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CLDN9O95484 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLDN9O95484 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.65■□□□□ 0.42
CLDN9O95484 LINC01126-201ENST00000623515 1646 ntBASIC17.65■□□□□ 0.42
CLDN9O95484 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLDN9O95484 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CLDN9O95484 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLDN9O95484 AC067852.2-201ENST00000590513 2313 ntBASIC17.65■□□□□ 0.42
CLDN9O95484 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLDN9O95484 PCDHB18P-201ENST00000524813 2368 ntBASIC17.65■□□□□ 0.42
CLDN9O95484 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLDN9O95484 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.65■□□□□ 0.42
CLDN9O95484 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CLDN9O95484 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.65■□□□□ 0.42
CLDN9O95484 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
CLDN9O95484 AL596275.1-201ENST00000423464 877 ntBASIC17.65■□□□□ 0.42
CLDN9O95484 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.65■□□□□ 0.42
CLDN9O95484 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.65■□□□□ 0.42
CLDN9O95484 AC093827.2-201ENST00000512654 315 ntBASIC17.65■□□□□ 0.42
CLDN9O95484 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.65■□□□□ 0.42
CLDN9O95484 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.65■□□□□ 0.42
CLDN9O95484 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.65■□□□□ 0.42
CLDN9O95484 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.65■□□□□ 0.42
CLDN9O95484 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.65■□□□□ 0.42
CLDN9O95484 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CLDN9O95484 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
CLDN9O95484 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLDN9O95484 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.65■□□□□ 0.42
CLDN9O95484 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLDN9O95484 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms