Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SDC3O75056 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
SDC3O75056 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SDC3O75056 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.82■□□□□ 0.44
SDC3O75056 POM121L3P-201ENST00000419331 1163 ntBASIC17.82■□□□□ 0.44
SDC3O75056 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.82■□□□□ 0.44
SDC3O75056 FAM197Y8-203ENST00000450145 560 ntBASIC17.82■□□□□ 0.44
SDC3O75056 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SDC3O75056 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.82■□□□□ 0.44
SDC3O75056 AC023511.2-201ENST00000618803 211 ntBASIC17.82■□□□□ 0.44
SDC3O75056 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.82■□□□□ 0.44
SDC3O75056 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.82■□□□□ 0.44
SDC3O75056 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SDC3O75056 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SDC3O75056 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SDC3O75056 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.82■□□□□ 0.44
SDC3O75056 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SDC3O75056 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
SDC3O75056 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SDC3O75056 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC3O75056 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
SDC3O75056 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC3O75056 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC3O75056 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC3O75056 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.81■□□□□ 0.44
SDC3O75056 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
SDC3O75056 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC3O75056 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC3O75056 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC3O75056 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC3O75056 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.81■□□□□ 0.44
SDC3O75056 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.81■□□□□ 0.44
SDC3O75056 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.81■□□□□ 0.44
SDC3O75056 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
SDC3O75056 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.81■□□□□ 0.44
SDC3O75056 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC3O75056 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDC3O75056 SDHAP2-201ENST00000455183 2001 ntBASIC17.81■□□□□ 0.44
SDC3O75056 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
SDC3O75056 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC3O75056 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.8■□□□□ 0.44
SDC3O75056 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC3O75056 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.8■□□□□ 0.44
SDC3O75056 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.8■□□□□ 0.44
SDC3O75056 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC3O75056 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.8■□□□□ 0.44
SDC3O75056 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SDC3O75056 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC3O75056 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC3O75056 MYLKP1-201ENST00000509077 1580 ntBASIC17.8■□□□□ 0.44
SDC3O75056 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
SDC3O75056 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC3O75056 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC3O75056 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.8■□□□□ 0.44
SDC3O75056 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.8■□□□□ 0.44
SDC3O75056 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SDC3O75056 AP001005.1-201ENST00000571755 1248 ntBASIC17.8■□□□□ 0.44
SDC3O75056 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.8■□□□□ 0.44
SDC3O75056 AC114341.1-201ENST00000618070 349 ntBASIC17.8■□□□□ 0.44
SDC3O75056 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC3O75056 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.8■□□□□ 0.44
SDC3O75056 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SDC3O75056 AC005332.7-201ENST00000614046 2005 ntBASIC17.8■□□□□ 0.44
SDC3O75056 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SDC3O75056 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC3O75056 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC3O75056 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SDC3O75056 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.8■□□□□ 0.44
SDC3O75056 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.8■□□□□ 0.44
SDC3O75056 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SDC3O75056 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC3O75056 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC3O75056 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDC3O75056 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.8■□□□□ 0.44
SDC3O75056 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SDC3O75056 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDC3O75056 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDC3O75056 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDC3O75056 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.79■□□□□ 0.44
SDC3O75056 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SDC3O75056 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDC3O75056 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDC3O75056 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.79■□□□□ 0.44
SDC3O75056 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDC3O75056 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.79■□□□□ 0.44
SDC3O75056 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDC3O75056 AC132008.2-207ENST00000454517 770 ntBASIC17.79■□□□□ 0.44
SDC3O75056 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.79■□□□□ 0.44
SDC3O75056 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.79■□□□□ 0.44
SDC3O75056 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.79■□□□□ 0.44
SDC3O75056 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SDC3O75056 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.79■□□□□ 0.44
SDC3O75056 AC148477.8-201ENST00000624298 468 ntBASIC17.79■□□□□ 0.44
SDC3O75056 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.79■□□□□ 0.44
SDC3O75056 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SDC3O75056 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDC3O75056 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
SDC3O75056 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SDC3O75056 AC005082.1-201ENST00000413042 2259 ntBASIC17.79■□□□□ 0.44
SDC3O75056 AC116562.4-201ENST00000641316 2276 ntBASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms