Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 SLC25A6P5-201ENST00000435663 894 ntBASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 AC024243.1-201ENST00000609234 778 ntBASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 FLJ13224-201ENST00000313737 1514 ntBASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
VPS9D1Q9Y2B5 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS9D1Q9Y2B5 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 AC138028.4-201ENST00000564984 1845 ntBASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 LIN28AP1-201ENST00000429574 405 ntBASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.16■□□□□ 0.5
VPS9D1Q9Y2B5 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms