Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC27.56■■■□□ 2
COL17A1Q9UMD9 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
COL17A1Q9UMD9 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
COL17A1Q9UMD9 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
COL17A1Q9UMD9 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC27.55■■■□□ 2
COL17A1Q9UMD9 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC27.55■■■□□ 2
COL17A1Q9UMD9 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC27.55■■■□□ 2
COL17A1Q9UMD9 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC27.55■■■□□ 2
COL17A1Q9UMD9 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC27.55■■■□□ 2
COL17A1Q9UMD9 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC27.55■■■□□ 2
COL17A1Q9UMD9 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC27.55■■■□□ 2
COL17A1Q9UMD9 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC27.55■■■□□ 2
COL17A1Q9UMD9 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC27.55■■■□□ 2
COL17A1Q9UMD9 MIR661-201ENST00000384842 89 ntBASIC27.55■■■□□ 2
COL17A1Q9UMD9 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC27.55■■■□□ 2
COL17A1Q9UMD9 MAL2-202ENST00000531508 892 ntTSL 3 BASIC27.55■■■□□ 2
COL17A1Q9UMD9 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC27.55■■■□□ 2
COL17A1Q9UMD9 PDPK2P-202ENST00000562415 1191 ntBASIC27.55■■■□□ 2
COL17A1Q9UMD9 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC27.55■■■□□ 2
COL17A1Q9UMD9 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC27.55■■■□□ 2
COL17A1Q9UMD9 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
COL17A1Q9UMD9 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC27.54■■■□□ 2
COL17A1Q9UMD9 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
COL17A1Q9UMD9 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC27.54■■■□□ 2
COL17A1Q9UMD9 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC27.54■■■□□ 2
COL17A1Q9UMD9 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC27.54■■■□□ 2
COL17A1Q9UMD9 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC27.54■■■□□ 2
COL17A1Q9UMD9 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC27.54■■■□□ 2
COL17A1Q9UMD9 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC27.54■■■□□ 2
COL17A1Q9UMD9 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC27.54■■■□□ 2
COL17A1Q9UMD9 CBR1-202ENST00000399191 838 ntTSL 3 BASIC27.54■■■□□ 2
COL17A1Q9UMD9 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
COL17A1Q9UMD9 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC27.54■■■□□ 2
COL17A1Q9UMD9 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC27.54■■■□□ 2
COL17A1Q9UMD9 AC109322.1-201ENST00000524499 1264 ntBASIC27.54■■■□□ 2
COL17A1Q9UMD9 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC27.54■■■□□ 2
COL17A1Q9UMD9 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC27.54■■■□□ 2
COL17A1Q9UMD9 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC27.54■■■□□ 2
COL17A1Q9UMD9 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC27.54■■■□□ 2
COL17A1Q9UMD9 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC27.54■■■□□ 2
COL17A1Q9UMD9 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
COL17A1Q9UMD9 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
COL17A1Q9UMD9 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC27.53■■■□□ 2
COL17A1Q9UMD9 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC27.53■■■□□ 2
COL17A1Q9UMD9 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
COL17A1Q9UMD9 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
COL17A1Q9UMD9 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC27.53■■■□□ 2
COL17A1Q9UMD9 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
COL17A1Q9UMD9 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC27.53■■■□□ 2
COL17A1Q9UMD9 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC27.53■■■□□ 2
COL17A1Q9UMD9 SLC4A1APP2-201ENST00000424054 1259 ntBASIC27.53■■■□□ 2
COL17A1Q9UMD9 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC27.53■■■□□ 2
COL17A1Q9UMD9 AJ011932.1-201ENST00000621707 465 ntBASIC27.53■■■□□ 2
COL17A1Q9UMD9 AL022326.1-202ENST00000641533 845 ntBASIC27.53■■■□□ 2
COL17A1Q9UMD9 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC27.53■■■□□ 2
COL17A1Q9UMD9 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC27.53■■■□□ 2
COL17A1Q9UMD9 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
COL17A1Q9UMD9 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC27.53■■■□□ 2
COL17A1Q9UMD9 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC27.53■■■□□ 2
COL17A1Q9UMD9 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC27.53■■■□□ 2
COL17A1Q9UMD9 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC27.52■■■□□ 2
COL17A1Q9UMD9 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
COL17A1Q9UMD9 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC27.52■■■□□ 2
COL17A1Q9UMD9 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC27.52■■■□□ 2
COL17A1Q9UMD9 SIGLEC30P-201ENST00000455569 941 ntBASIC27.52■■■□□ 2
COL17A1Q9UMD9 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC27.52■■■□□ 2
COL17A1Q9UMD9 AC009154.2-201ENST00000621177 724 ntBASIC27.52■■■□□ 2
COL17A1Q9UMD9 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
COL17A1Q9UMD9 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
COL17A1Q9UMD9 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
COL17A1Q9UMD9 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
COL17A1Q9UMD9 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC27.52■■■□□ 2
COL17A1Q9UMD9 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC27.52■■■□□ 2
COL17A1Q9UMD9 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC27.51■■■□□ 2
COL17A1Q9UMD9 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC27.51■■■□□ 2
COL17A1Q9UMD9 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC27.51■■■□□ 2
COL17A1Q9UMD9 MRPL20P1-201ENST00000400819 433 ntBASIC27.51■■■□□ 2
COL17A1Q9UMD9 IGLL3P-201ENST00000412472 434 ntBASIC27.51■■■□□ 2
COL17A1Q9UMD9 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC27.51■■■□□ 2
COL17A1Q9UMD9 AC108073.2-201ENST00000464002 357 ntBASIC27.51■■■□□ 2
COL17A1Q9UMD9 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC27.51■■■□□ 2
COL17A1Q9UMD9 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC27.51■■■□□ 2
COL17A1Q9UMD9 DUX4L17-201ENST00000557360 1267 ntBASIC27.51■■■□□ 2
COL17A1Q9UMD9 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC27.51■■■□□ 2
COL17A1Q9UMD9 AL513210.1-201ENST00000629608 234 ntBASIC27.51■■■□□ 2
COL17A1Q9UMD9 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC27.51■■□□□ 1.99
COL17A1Q9UMD9 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC27.51■■□□□ 1.99
COL17A1Q9UMD9 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC27.51■■□□□ 1.99
COL17A1Q9UMD9 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC27.51■■□□□ 1.99
COL17A1Q9UMD9 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC27.51■■□□□ 1.99
COL17A1Q9UMD9 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC27.51■■□□□ 1.99
COL17A1Q9UMD9 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC27.51■■□□□ 1.99
COL17A1Q9UMD9 AL163051.1-201ENST00000569214 1512 ntBASIC27.51■■□□□ 1.99
COL17A1Q9UMD9 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC27.51■■□□□ 1.99
COL17A1Q9UMD9 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
COL17A1Q9UMD9 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC27.51■■□□□ 1.99
COL17A1Q9UMD9 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC27.51■■□□□ 1.99
COL17A1Q9UMD9 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
COL17A1Q9UMD9 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
COL17A1Q9UMD9 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC27.5■■□□□ 1.99
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms