Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
SIX4Q9UIU6 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
SIX4Q9UIU6 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SIX4Q9UIU6 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
SIX4Q9UIU6 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.52■□□□□ 0.71
SIX4Q9UIU6 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 SP100-208ENST00000427101 1922 ntTSL 2 BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.51■□□□□ 0.71
SIX4Q9UIU6 CHCHD2P8-201ENST00000429873 447 ntBASIC19.51■□□□□ 0.71
SIX4Q9UIU6 ATP5G2P1-201ENST00000433580 426 ntBASIC19.51■□□□□ 0.71
SIX4Q9UIU6 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 RN7SL606P-201ENST00000472779 293 ntBASIC19.51■□□□□ 0.71
SIX4Q9UIU6 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.51■□□□□ 0.71
SIX4Q9UIU6 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX4Q9UIU6 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.5■□□□□ 0.71
SIX4Q9UIU6 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
SIX4Q9UIU6 AL096828.2-201ENST00000567259 1965 ntBASIC19.5■□□□□ 0.71
SIX4Q9UIU6 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.5■□□□□ 0.71
SIX4Q9UIU6 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SIX4Q9UIU6 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SIX4Q9UIU6 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SIX4Q9UIU6 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SIX4Q9UIU6 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SIX4Q9UIU6 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
SIX4Q9UIU6 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.5■□□□□ 0.71
SIX4Q9UIU6 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SIX4Q9UIU6 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.5■□□□□ 0.71
SIX4Q9UIU6 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SIX4Q9UIU6 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 BICD1-207ENST00000551848 1962 ntBASIC19.49■□□□□ 0.71
SIX4Q9UIU6 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SIX4Q9UIU6 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SIX4Q9UIU6 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SIX4Q9UIU6 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SIX4Q9UIU6 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SIX4Q9UIU6 FLYWCH1P1-201ENST00000460917 1874 ntBASIC19.48■□□□□ 0.71
SIX4Q9UIU6 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.48■□□□□ 0.71
SIX4Q9UIU6 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.48■□□□□ 0.71
SIX4Q9UIU6 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SIX4Q9UIU6 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.48■□□□□ 0.71
SIX4Q9UIU6 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
SIX4Q9UIU6 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SIX4Q9UIU6 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.48■□□□□ 0.71
SIX4Q9UIU6 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SIX4Q9UIU6 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.48■□□□□ 0.71
SIX4Q9UIU6 AP002414.4-201ENST00000589764 1148 ntBASIC19.48■□□□□ 0.71
SIX4Q9UIU6 AL592071.1-201ENST00000611956 408 ntBASIC19.48■□□□□ 0.71
SIX4Q9UIU6 AC092119.3-201ENST00000612618 583 ntBASIC19.48■□□□□ 0.71
SIX4Q9UIU6 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SIX4Q9UIU6 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.48■□□□□ 0.71
SIX4Q9UIU6 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SIX4Q9UIU6 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms