Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC132938.6-201ENST00000623828 1655 ntBASIC23.58■■□□□ 1.37
SHANK3Q9BYB0 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
SHANK3Q9BYB0 AC007952.6-201ENST00000573168 2673 ntBASIC23.58■■□□□ 1.37
SHANK3Q9BYB0 AC003957.1-201ENST00000625108 2673 ntBASIC23.58■■□□□ 1.37
SHANK3Q9BYB0 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SHANK3Q9BYB0 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
SHANK3Q9BYB0 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
SHANK3Q9BYB0 LAGE3P1-201ENST00000425356 484 ntBASIC23.58■■□□□ 1.37
SHANK3Q9BYB0 NKAPP1-205ENST00000585790 367 ntBASIC23.58■■□□□ 1.37
SHANK3Q9BYB0 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC23.58■■□□□ 1.36
SHANK3Q9BYB0 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
SHANK3Q9BYB0 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
SHANK3Q9BYB0 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.36
SHANK3Q9BYB0 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC23.57■■□□□ 1.36
SHANK3Q9BYB0 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC23.57■■□□□ 1.36
SHANK3Q9BYB0 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SHANK3Q9BYB0 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SHANK3Q9BYB0 AC009947.1-201ENST00000444350 727 ntBASIC23.57■■□□□ 1.36
SHANK3Q9BYB0 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC23.57■■□□□ 1.36
SHANK3Q9BYB0 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SHANK3Q9BYB0 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
SHANK3Q9BYB0 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
SHANK3Q9BYB0 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SHANK3Q9BYB0 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SHANK3Q9BYB0 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SHANK3Q9BYB0 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SHANK3Q9BYB0 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
SHANK3Q9BYB0 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC23.57■■□□□ 1.36
SHANK3Q9BYB0 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
SHANK3Q9BYB0 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SHANK3Q9BYB0 IMP4-203ENST00000409935 958 ntTSL 5 BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 MIR3197-201ENST00000582241 73 ntBASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 SDCCAG3P1-201ENST00000589292 1150 ntBASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 AC005082.1-201ENST00000413042 2259 ntBASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 COBL-210ENST00000632460 1941 ntTSL 5 BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 COPE-211ENST00000600932 1144 ntTSL 5 BASIC23.56■■□□□ 1.36
SHANK3Q9BYB0 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
SHANK3Q9BYB0 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
SHANK3Q9BYB0 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC23.55■■□□□ 1.36
SHANK3Q9BYB0 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC23.55■■□□□ 1.36
SHANK3Q9BYB0 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC23.55■■□□□ 1.36
SHANK3Q9BYB0 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC23.55■■□□□ 1.36
SHANK3Q9BYB0 DNAJB3-202ENST00000449667 1266 ntBASIC23.55■■□□□ 1.36
SHANK3Q9BYB0 KRT18P3-201ENST00000451602 1288 ntBASIC23.55■■□□□ 1.36
SHANK3Q9BYB0 AC004967.1-201ENST00000453589 447 ntBASIC23.55■■□□□ 1.36
SHANK3Q9BYB0 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC23.55■■□□□ 1.36
SHANK3Q9BYB0 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
SHANK3Q9BYB0 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
SHANK3Q9BYB0 AFG3L1P-217ENST00000557444 2447 ntBASIC23.55■■□□□ 1.36
SHANK3Q9BYB0 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC23.55■■□□□ 1.36
SHANK3Q9BYB0 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 DHDH-204ENST00000523250 634 ntTSL 5 BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 ANO7L1-203ENST00000602586 1720 ntBASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC23.54■■□□□ 1.36
SHANK3Q9BYB0 AC073592.4-201ENST00000623827 446 ntBASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 SIGLEC16-201ENST00000599858 1437 ntBASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 PCDHAC2-203ENST00000615316 3011 ntBASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms