Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 AC096582.2-201ENST00000510860 516 ntBASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 AF238378.1-201ENST00000526806 358 ntBASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
PAAF1Q9BRP4 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 MTCL1P1-201ENST00000446207 792 ntBASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 AP002469.2-201ENST00000531724 424 ntBASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 AL121912.1-201ENST00000603683 238 ntBASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 REXO1L6P-202ENST00000619970 1078 ntBASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PAAF1Q9BRP4 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 ESPNP-201ENST00000270691 2015 ntBASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 MRPL3P1-201ENST00000400109 1033 ntBASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 AP000347.1-202ENST00000435868 847 ntBASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 MIR5100-201ENST00000579544 119 ntBASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 SLC25A6P4-201ENST00000586535 553 ntBASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 AC009154.2-201ENST00000621177 724 ntBASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
PAAF1Q9BRP4 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms