Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 AC064836.3-201ENST00000607928 673 ntBASIC18.01■□□□□ 0.47
VPS13AQ96RL7 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 AC011467.2-201ENST00000598425 242 ntBASIC18.01■□□□□ 0.47
VPS13AQ96RL7 AP000867.4-201ENST00000641616 219 ntBASIC18.01■□□□□ 0.47
VPS13AQ96RL7 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
VPS13AQ96RL7 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS13AQ96RL7 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS13AQ96RL7 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
VPS13AQ96RL7 PAWRP1-201ENST00000451083 565 ntBASIC18■□□□□ 0.47
VPS13AQ96RL7 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
VPS13AQ96RL7 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS13AQ96RL7 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18■□□□□ 0.47
VPS13AQ96RL7 AL513190.1-201ENST00000621254 727 ntBASIC18■□□□□ 0.47
VPS13AQ96RL7 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS13AQ96RL7 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS13AQ96RL7 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18■□□□□ 0.47
VPS13AQ96RL7 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18■□□□□ 0.47
VPS13AQ96RL7 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18■□□□□ 0.47
VPS13AQ96RL7 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS13AQ96RL7 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
VPS13AQ96RL7 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS13AQ96RL7 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS13AQ96RL7 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS13AQ96RL7 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18■□□□□ 0.47
VPS13AQ96RL7 AC109322.1-201ENST00000524499 1264 ntBASIC18■□□□□ 0.47
VPS13AQ96RL7 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS13AQ96RL7 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS13AQ96RL7 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
VPS13AQ96RL7 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
VPS13AQ96RL7 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 AL499627.1-201ENST00000569373 2188 ntBASIC17.99■□□□□ 0.47
VPS13AQ96RL7 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 AC097374.2-201ENST00000618617 1306 ntBASIC17.99■□□□□ 0.47
VPS13AQ96RL7 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 KRT8P50-201ENST00000562022 1438 ntBASIC17.99■□□□□ 0.47
VPS13AQ96RL7 GK-202ENST00000378941 458 ntTSL 3 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS13AQ96RL7 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 AC113404.2-201ENST00000507884 177 ntBASIC17.98■□□□□ 0.47
VPS13AQ96RL7 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.98■□□□□ 0.47
VPS13AQ96RL7 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms