Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 AC138028.4-201ENST00000564984 1845 ntBASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 AC113404.2-201ENST00000507884 177 ntBASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.63■□□□□ 0.57
SHROOM3Q8TF72 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 AC069148.1-201ENST00000608741 768 ntBASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 AC018470.1-201ENST00000624790 3129 ntBASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 RNF152P1-201ENST00000397754 604 ntBASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 TSPY5P-201ENST00000426936 936 ntBASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 MIR3180-4-201ENST00000582223 153 ntBASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 GPR32P1-201ENST00000601788 811 ntBASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHROOM3Q8TF72 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 FAM8A6P-201ENST00000407496 1135 ntBASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 SPDYE13P-201ENST00000445314 798 ntBASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 AC024563.2-201ENST00000603282 481 ntBASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 AC079602.3-201ENST00000623931 403 ntBASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 LINC00167-201ENST00000530583 1419 ntBASIC18.61■□□□□ 0.57
SHROOM3Q8TF72 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms