Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 GMCL1P1-201ENST00000463439 1581 ntBASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 AIRN-201ENST00000601203 4374 ntBASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 TSPY19P-201ENST00000418461 509 ntBASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 AC246785.2-201ENST00000432512 513 ntBASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 TSPY18P-201ENST00000441642 509 ntBASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC60Q8IWA6 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
CCDC60Q8IWA6 WIZP1-201ENST00000531444 2299 ntBASIC20.27■□□□□ 0.83
CCDC60Q8IWA6 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC60Q8IWA6 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 AC011840.4-201ENST00000578471 627 ntBASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 AC138894.3-201ENST00000603787 634 ntBASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 NSUN5P1-202ENST00000421140 1535 ntBASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 NSUN5P2-203ENST00000457352 1529 ntBASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.26■□□□□ 0.83
CCDC60Q8IWA6 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 AC068472.1-201ENST00000474589 881 ntBASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 AC099336.1-202ENST00000602961 463 ntBASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CCDC60Q8IWA6 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 VENTXP7-201ENST00000475503 772 ntBASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 IFNL4P1-201ENST00000607083 540 ntBASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC60Q8IWA6 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms