Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 FOSL1P1-201ENST00000511041 816 ntBASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 AP000867.3-201ENST00000524675 377 ntBASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 TPSP2-201ENST00000561760 610 ntBASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 NOC2LP1-202ENST00000452600 2235 ntBASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 AL109659.2-201ENST00000606809 1674 ntBASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 AP002469.2-201ENST00000531724 424 ntBASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 AL671883.3-201ENST00000603274 991 ntBASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 AC112777.1-201ENST00000540175 1423 ntBASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SH3RF1Q7Z6J0 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 LINC00265-3P-201ENST00000447588 903 ntBASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 KRT18P41-201ENST00000518924 1277 ntBASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SH3RF1Q7Z6J0 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 MRPL3P1-201ENST00000400109 1033 ntBASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 TSPY22P-201ENST00000427496 604 ntBASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 KRT18P31-201ENST00000506277 1292 ntBASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 AC106795.1-205ENST00000512851 1056 ntBASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 AL121772.3-201ENST00000610840 674 ntBASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SH3RF1Q7Z6J0 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms