Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.57■□□□□ 0.56
USP39Q53GS9 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.57■□□□□ 0.56
USP39Q53GS9 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP39Q53GS9 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.57■□□□□ 0.56
USP39Q53GS9 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
USP39Q53GS9 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP39Q53GS9 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP39Q53GS9 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.57■□□□□ 0.56
USP39Q53GS9 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP39Q53GS9 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.57■□□□□ 0.56
USP39Q53GS9 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.57■□□□□ 0.56
USP39Q53GS9 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
USP39Q53GS9 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USP39Q53GS9 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.56■□□□□ 0.56
USP39Q53GS9 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP39Q53GS9 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
USP39Q53GS9 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP39Q53GS9 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.56■□□□□ 0.56
USP39Q53GS9 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP39Q53GS9 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP39Q53GS9 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP39Q53GS9 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP39Q53GS9 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP39Q53GS9 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP39Q53GS9 IGHGP-201ENST00000390555 1178 ntBASIC18.56■□□□□ 0.56
USP39Q53GS9 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
USP39Q53GS9 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.56■□□□□ 0.56
USP39Q53GS9 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.56■□□□□ 0.56
USP39Q53GS9 AC024563.2-201ENST00000603282 481 ntBASIC18.56■□□□□ 0.56
USP39Q53GS9 AC064862.7-201ENST00000604520 867 ntBASIC18.56■□□□□ 0.56
USP39Q53GS9 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.56■□□□□ 0.56
USP39Q53GS9 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.56■□□□□ 0.56
USP39Q53GS9 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP39Q53GS9 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.56■□□□□ 0.56
USP39Q53GS9 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP39Q53GS9 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
USP39Q53GS9 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP39Q53GS9 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.56■□□□□ 0.56
USP39Q53GS9 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.56■□□□□ 0.56
USP39Q53GS9 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.56■□□□□ 0.56
USP39Q53GS9 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP39Q53GS9 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP39Q53GS9 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USP39Q53GS9 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.56■□□□□ 0.56
USP39Q53GS9 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP39Q53GS9 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP39Q53GS9 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP39Q53GS9 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP39Q53GS9 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP39Q53GS9 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP39Q53GS9 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.55■□□□□ 0.56
USP39Q53GS9 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
USP39Q53GS9 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP39Q53GS9 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.55■□□□□ 0.56
USP39Q53GS9 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP39Q53GS9 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP39Q53GS9 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
USP39Q53GS9 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
USP39Q53GS9 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP39Q53GS9 MRPL3P1-201ENST00000400109 1033 ntBASIC18.55■□□□□ 0.56
USP39Q53GS9 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
USP39Q53GS9 IGHV3-47-201ENST00000425060 335 ntBASIC18.55■□□□□ 0.56
USP39Q53GS9 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.55■□□□□ 0.56
USP39Q53GS9 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.55■□□□□ 0.56
USP39Q53GS9 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
USP39Q53GS9 AL592071.1-201ENST00000611956 408 ntBASIC18.55■□□□□ 0.56
USP39Q53GS9 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.55■□□□□ 0.56
USP39Q53GS9 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.55■□□□□ 0.56
USP39Q53GS9 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP39Q53GS9 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP39Q53GS9 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
USP39Q53GS9 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.55■□□□□ 0.56
USP39Q53GS9 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
USP39Q53GS9 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP39Q53GS9 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP39Q53GS9 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.54■□□□□ 0.56
USP39Q53GS9 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
USP39Q53GS9 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.54■□□□□ 0.56
USP39Q53GS9 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.54■□□□□ 0.56
USP39Q53GS9 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.54■□□□□ 0.56
USP39Q53GS9 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 AC009065.1-201ENST00000564055 1225 ntBASIC18.54■□□□□ 0.56
USP39Q53GS9 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.54■□□□□ 0.56
USP39Q53GS9 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.54■□□□□ 0.56
USP39Q53GS9 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.54■□□□□ 0.56
USP39Q53GS9 BX640515.1-201ENST00000617215 977 ntBASIC18.54■□□□□ 0.56
USP39Q53GS9 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.54■□□□□ 0.56
USP39Q53GS9 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms