Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 EGLN1P1-201ENST00000531623 762 ntBASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 FZD10-202ENST00000539839 3282 ntBASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 NOC2LP2-201ENST00000407594 1944 ntBASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 CYP2D8P-201ENST00000433633 1490 ntBASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 MIR149-201ENST00000384879 89 ntBASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 AC128688.1-201ENST00000487626 519 ntBASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 NAPSB-206ENST00000562112 1266 ntBASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 AC010653.2-201ENST00000623505 997 ntBASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC40Q4G0X9 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 INGX-201ENST00000359239 846 ntBASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 AC112497.1-201ENST00000624824 639 ntBASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC40Q4G0X9 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 SDHAP2-201ENST00000455183 2001 ntBASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 MMP23A-201ENST00000234610 1017 ntBASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CCDC40Q4G0X9 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms