Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC13.14□□□□□ -0.31
PRKDCP78527 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC13.14□□□□□ -0.31
PRKDCP78527 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC13.14□□□□□ -0.31
PRKDCP78527 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
PRKDCP78527 KRT8P32-201ENST00000512863 1461 ntBASIC13.14□□□□□ -0.31
PRKDCP78527 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
PRKDCP78527 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
PRKDCP78527 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
PRKDCP78527 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
PRKDCP78527 AC055876.3-201ENST00000431496 288 ntBASIC13.14□□□□□ -0.31
PRKDCP78527 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
PRKDCP78527 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC13.14□□□□□ -0.31
PRKDCP78527 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC13.14□□□□□ -0.31
PRKDCP78527 AC138649.4-201ENST00000612222 287 ntBASIC13.14□□□□□ -0.31
PRKDCP78527 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC13.14□□□□□ -0.31
PRKDCP78527 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC13.14□□□□□ -0.31
PRKDCP78527 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC13.14□□□□□ -0.31
PRKDCP78527 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
PRKDCP78527 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC13.13□□□□□ -0.31
PRKDCP78527 SOD2-201ENST00000337404 991 ntTSL 2 BASIC13.13□□□□□ -0.31
PRKDCP78527 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
PRKDCP78527 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC13.13□□□□□ -0.31
PRKDCP78527 AC004835.2-201ENST00000603762 682 ntBASIC13.13□□□□□ -0.31
PRKDCP78527 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
PRKDCP78527 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC13.13□□□□□ -0.31
PRKDCP78527 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC13.13□□□□□ -0.31
PRKDCP78527 CR383656.12-201ENST00000549567 513 ntBASIC13.13□□□□□ -0.31
PRKDCP78527 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC13.13□□□□□ -0.31
PRKDCP78527 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC13.13□□□□□ -0.31
PRKDCP78527 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC13.13□□□□□ -0.31
PRKDCP78527 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
PRKDCP78527 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 AL121761.2-201ENST00000598007 1648 ntBASIC13.13□□□□□ -0.31
PRKDCP78527 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
PRKDCP78527 IGHV3-65-201ENST00000523210 341 ntBASIC13.13□□□□□ -0.31
PRKDCP78527 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC13.13□□□□□ -0.31
PRKDCP78527 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC13.13□□□□□ -0.31
PRKDCP78527 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
PRKDCP78527 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC13.13□□□□□ -0.31
PRKDCP78527 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 MED29-202ENST00000594368 1471 ntTSL 2 BASIC13.13□□□□□ -0.31
PRKDCP78527 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
PRKDCP78527 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
PRKDCP78527 SLC4A1APP2-201ENST00000424054 1259 ntBASIC13.12□□□□□ -0.31
PRKDCP78527 COQ9-214ENST00000567933 882 ntTSL 3 BASIC13.12□□□□□ -0.31
PRKDCP78527 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC13.12□□□□□ -0.31
PRKDCP78527 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
PRKDCP78527 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
PRKDCP78527 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
PRKDCP78527 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC13.12□□□□□ -0.31
PRKDCP78527 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
PRKDCP78527 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
PRKDCP78527 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
PRKDCP78527 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
PRKDCP78527 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
PRKDCP78527 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
PRKDCP78527 RHOQP3-201ENST00000437982 621 ntBASIC13.12□□□□□ -0.31
PRKDCP78527 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
PRKDCP78527 RNA5SP421-201ENST00000516864 134 ntBASIC13.12□□□□□ -0.31
PRKDCP78527 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
PRKDCP78527 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC13.12□□□□□ -0.31
PRKDCP78527 AL033527.4-201ENST00000641026 673 ntBASIC13.12□□□□□ -0.31
PRKDCP78527 AC092667.1-201ENST00000434301 2586 ntBASIC13.12□□□□□ -0.31
PRKDCP78527 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
PRKDCP78527 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
PRKDCP78527 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC13.12□□□□□ -0.31
PRKDCP78527 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC13.12□□□□□ -0.31
PRKDCP78527 AC004945.1-201ENST00000416738 983 ntBASIC13.12□□□□□ -0.31
PRKDCP78527 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC13.12□□□□□ -0.31
PRKDCP78527 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC13.12□□□□□ -0.31
PRKDCP78527 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC13.12□□□□□ -0.31
PRKDCP78527 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
PRKDCP78527 Z82202.1-201ENST00000623446 1880 ntBASIC13.12□□□□□ -0.31
PRKDCP78527 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC13.12□□□□□ -0.31
PRKDCP78527 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
PRKDCP78527 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
PRKDCP78527 PARP8-206ENST00000503665 572 ntTSL 4 BASIC13.11□□□□□ -0.31
PRKDCP78527 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
PRKDCP78527 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC13.11□□□□□ -0.31
PRKDCP78527 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC13.11□□□□□ -0.31
PRKDCP78527 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC13.11□□□□□ -0.31
PRKDCP78527 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
PRKDCP78527 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
PRKDCP78527 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC13.11□□□□□ -0.31
PRKDCP78527 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms