Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
CLRN1P58418 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
CLRN1P58418 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.36■□□□□ 0.21
CLRN1P58418 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.36■□□□□ 0.21
CLRN1P58418 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.36■□□□□ 0.21
CLRN1P58418 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CLRN1P58418 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
CLRN1P58418 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.36■□□□□ 0.21
CLRN1P58418 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CLRN1P58418 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
CLRN1P58418 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CLRN1P58418 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN1P58418 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.36■□□□□ 0.21
CLRN1P58418 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLRN1P58418 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
CLRN1P58418 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
CLRN1P58418 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN1P58418 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CLRN1P58418 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN1P58418 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
CLRN1P58418 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN1P58418 AC135776.1-201ENST00000319817 2481 ntBASIC16.35■□□□□ 0.21
CLRN1P58418 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN1P58418 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN1P58418 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN1P58418 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.35■□□□□ 0.21
CLRN1P58418 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.35■□□□□ 0.21
CLRN1P58418 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.35■□□□□ 0.21
CLRN1P58418 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.35■□□□□ 0.21
CLRN1P58418 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.35■□□□□ 0.21
CLRN1P58418 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.35■□□□□ 0.21
CLRN1P58418 AC104390.1-201ENST00000555663 520 ntBASIC16.35■□□□□ 0.21
CLRN1P58418 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC16.35■□□□□ 0.21
CLRN1P58418 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.35■□□□□ 0.21
CLRN1P58418 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN1P58418 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.35■□□□□ 0.21
CLRN1P58418 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.35■□□□□ 0.21
CLRN1P58418 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN1P58418 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN1P58418 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16.35■□□□□ 0.21
CLRN1P58418 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.35■□□□□ 0.21
CLRN1P58418 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN1P58418 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.35■□□□□ 0.21
CLRN1P58418 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN1P58418 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN1P58418 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLRN1P58418 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.34■□□□□ 0.21
CLRN1P58418 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CLRN1P58418 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.34■□□□□ 0.21
CLRN1P58418 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.34■□□□□ 0.21
CLRN1P58418 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.34■□□□□ 0.21
CLRN1P58418 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.34■□□□□ 0.21
CLRN1P58418 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
CLRN1P58418 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.34■□□□□ 0.21
CLRN1P58418 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.34■□□□□ 0.21
CLRN1P58418 AP000523.1-201ENST00000398242 1049 ntBASIC16.34■□□□□ 0.21
CLRN1P58418 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CLRN1P58418 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CLRN1P58418 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.34■□□□□ 0.21
CLRN1P58418 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.34■□□□□ 0.21
CLRN1P58418 AC145285.6-201ENST00000604632 637 ntBASIC16.34■□□□□ 0.21
CLRN1P58418 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.34■□□□□ 0.21
CLRN1P58418 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.34■□□□□ 0.21
CLRN1P58418 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.34■□□□□ 0.21
CLRN1P58418 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
CLRN1P58418 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
CLRN1P58418 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CLRN1P58418 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CLRN1P58418 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLRN1P58418 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.34■□□□□ 0.21
CLRN1P58418 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CLRN1P58418 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CLRN1P58418 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CLRN1P58418 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC16.33■□□□□ 0.21
CLRN1P58418 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CLRN1P58418 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.21
CLRN1P58418 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.33■□□□□ 0.21
CLRN1P58418 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
CLRN1P58418 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms