Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CR1P49238 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CR1P49238 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CX3CR1P49238 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CR1P49238 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CR1P49238 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CR1P49238 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.1■□□□□ 0.17
CX3CR1P49238 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CX3CR1P49238 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CX3CR1P49238 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CR1P49238 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.09■□□□□ 0.17
CX3CR1P49238 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
CX3CR1P49238 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CR1P49238 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.09■□□□□ 0.17
CX3CR1P49238 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.09■□□□□ 0.17
CX3CR1P49238 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CR1P49238 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.09■□□□□ 0.17
CX3CR1P49238 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC16.09■□□□□ 0.17
CX3CR1P49238 FITM1-202ENST00000559294 800 ntBASIC16.09■□□□□ 0.17
CX3CR1P49238 AL353719.1-201ENST00000566847 864 ntBASIC16.09■□□□□ 0.17
CX3CR1P49238 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.09■□□□□ 0.17
CX3CR1P49238 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CR1P49238 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC16.09■□□□□ 0.17
CX3CR1P49238 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.09■□□□□ 0.17
CX3CR1P49238 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.09■□□□□ 0.17
CX3CR1P49238 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CR1P49238 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CR1P49238 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CR1P49238 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CR1P49238 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CX3CR1P49238 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CX3CR1P49238 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
CX3CR1P49238 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CX3CR1P49238 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
CX3CR1P49238 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CX3CR1P49238 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.08■□□□□ 0.17
CX3CR1P49238 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
CX3CR1P49238 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CX3CR1P49238 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CX3CR1P49238 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CR1P49238 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
CX3CR1P49238 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CR1P49238 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CR1P49238 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CR1P49238 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.08■□□□□ 0.16
CX3CR1P49238 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.08■□□□□ 0.16
CX3CR1P49238 KRT18P23-201ENST00000435622 1283 ntBASIC16.08■□□□□ 0.16
CX3CR1P49238 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.08■□□□□ 0.16
CX3CR1P49238 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.08■□□□□ 0.16
CX3CR1P49238 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.08■□□□□ 0.16
CX3CR1P49238 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC16.08■□□□□ 0.16
CX3CR1P49238 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CR1P49238 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.08■□□□□ 0.16
CX3CR1P49238 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.08■□□□□ 0.16
CX3CR1P49238 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.08■□□□□ 0.16
CX3CR1P49238 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.08■□□□□ 0.16
CX3CR1P49238 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CR1P49238 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CR1P49238 KRT17P2-201ENST00000300992 1314 ntBASIC16.08■□□□□ 0.16
CX3CR1P49238 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
CX3CR1P49238 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CR1P49238 AC099343.3-201ENST00000605834 2503 ntBASIC16.08■□□□□ 0.16
CX3CR1P49238 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.08■□□□□ 0.16
CX3CR1P49238 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
CX3CR1P49238 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CR1P49238 GMCL1P1-201ENST00000463439 1581 ntBASIC16.08■□□□□ 0.16
CX3CR1P49238 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CR1P49238 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.08■□□□□ 0.16
CX3CR1P49238 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.08■□□□□ 0.16
CX3CR1P49238 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CR1P49238 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.08■□□□□ 0.16
CX3CR1P49238 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CR1P49238 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.08■□□□□ 0.16
CX3CR1P49238 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CX3CR1P49238 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CR1P49238 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.07■□□□□ 0.16
CX3CR1P49238 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CR1P49238 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CR1P49238 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CR1P49238 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.07■□□□□ 0.16
CX3CR1P49238 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CR1P49238 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CR1P49238 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.07■□□□□ 0.16
CX3CR1P49238 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.07■□□□□ 0.16
CX3CR1P49238 BX088651.1-201ENST00000540551 451 ntBASIC16.07■□□□□ 0.16
CX3CR1P49238 C2orf69P3-201ENST00000565542 1120 ntBASIC16.07■□□□□ 0.16
CX3CR1P49238 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CR1P49238 CR769767.2-201ENST00000622735 460 ntBASIC16.07■□□□□ 0.16
CX3CR1P49238 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CX3CR1P49238 AC116562.4-202ENST00000641738 218 ntBASIC16.07■□□□□ 0.16
CX3CR1P49238 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CR1P49238 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CX3CR1P49238 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CR1P49238 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CR1P49238 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.07■□□□□ 0.16
CX3CR1P49238 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.07■□□□□ 0.16
CX3CR1P49238 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CX3CR1P49238 REXO1L9P-201ENST00000604264 2108 ntBASIC16.07■□□□□ 0.16
CX3CR1P49238 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CX3CR1P49238 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms