Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 AC134043.2-201ENST00000624206 2238 ntBASIC19.3■□□□□ 0.68
CHRNA3P32297 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA3P32297 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA3P32297 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.3■□□□□ 0.68
CHRNA3P32297 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA3P32297 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.3■□□□□ 0.68
CHRNA3P32297 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHRNA3P32297 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.29■□□□□ 0.68
CHRNA3P32297 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHRNA3P32297 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHRNA3P32297 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CHRNA3P32297 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CHRNA3P32297 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CHRNA3P32297 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.29■□□□□ 0.68
CHRNA3P32297 MYLKP1-201ENST00000509077 1580 ntBASIC19.29■□□□□ 0.68
CHRNA3P32297 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHRNA3P32297 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHRNA3P32297 HMGA1P5-201ENST00000412453 271 ntBASIC19.29■□□□□ 0.68
CHRNA3P32297 ATP5G1P1-201ENST00000448724 379 ntBASIC19.29■□□□□ 0.68
CHRNA3P32297 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CHRNA3P32297 AL353719.1-201ENST00000566847 864 ntBASIC19.29■□□□□ 0.68
CHRNA3P32297 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
CHRNA3P32297 AC010331.1-201ENST00000611423 582 ntBASIC19.29■□□□□ 0.68
CHRNA3P32297 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHRNA3P32297 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC19.29■□□□□ 0.68
CHRNA3P32297 RCC2P3-201ENST00000418112 1537 ntBASIC19.29■□□□□ 0.68
CHRNA3P32297 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.29■□□□□ 0.68
CHRNA3P32297 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHRNA3P32297 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHRNA3P32297 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CHRNA3P32297 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.29■□□□□ 0.68
CHRNA3P32297 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.29■□□□□ 0.68
CHRNA3P32297 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHRNA3P32297 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHRNA3P32297 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC19.28■□□□□ 0.68
CHRNA3P32297 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CHRNA3P32297 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHRNA3P32297 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHRNA3P32297 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHRNA3P32297 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHRNA3P32297 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.28■□□□□ 0.68
CHRNA3P32297 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHRNA3P32297 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHRNA3P32297 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHRNA3P32297 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.28■□□□□ 0.68
CHRNA3P32297 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.28■□□□□ 0.68
CHRNA3P32297 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.28■□□□□ 0.68
CHRNA3P32297 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.28■□□□□ 0.68
CHRNA3P32297 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.28■□□□□ 0.68
CHRNA3P32297 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHRNA3P32297 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.28■□□□□ 0.68
CHRNA3P32297 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.28■□□□□ 0.68
CHRNA3P32297 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHRNA3P32297 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CHRNA3P32297 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
CHRNA3P32297 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHRNA3P32297 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHRNA3P32297 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHRNA3P32297 LINC00896-202ENST00000609602 2128 ntBASIC19.28■□□□□ 0.68
CHRNA3P32297 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHRNA3P32297 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
CHRNA3P32297 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.28■□□□□ 0.68
CHRNA3P32297 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHRNA3P32297 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHRNA3P32297 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CHRNA3P32297 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.27■□□□□ 0.68
CHRNA3P32297 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHRNA3P32297 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHRNA3P32297 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.27■□□□□ 0.68
CHRNA3P32297 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHRNA3P32297 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CHRNA3P32297 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHRNA3P32297 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.27■□□□□ 0.68
CHRNA3P32297 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHRNA3P32297 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHRNA3P32297 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHRNA3P32297 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.27■□□□□ 0.68
CHRNA3P32297 KRT18P41-201ENST00000518924 1277 ntBASIC19.27■□□□□ 0.68
CHRNA3P32297 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CHRNA3P32297 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHRNA3P32297 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
CHRNA3P32297 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CHRNA3P32297 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CHRNA3P32297 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CHRNA3P32297 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CHRNA3P32297 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.26■□□□□ 0.67
CHRNA3P32297 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.26■□□□□ 0.67
CHRNA3P32297 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHRNA3P32297 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CHRNA3P32297 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHRNA3P32297 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
CHRNA3P32297 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CHRNA3P32297 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHRNA3P32297 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.26■□□□□ 0.67
CHRNA3P32297 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHRNA3P32297 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHRNA3P32297 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHRNA3P32297 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHRNA3P32297 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHRNA3P32297 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms