Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC111152.3-201ENST00000569699 673 ntBASIC14.14□□□□□ -0.15
HOXD3P31249 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC14.14□□□□□ -0.15
HOXD3P31249 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD3P31249 AC079602.3-201ENST00000623931 403 ntBASIC14.14□□□□□ -0.15
HOXD3P31249 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD3P31249 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD3P31249 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC14.14□□□□□ -0.15
HOXD3P31249 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD3P31249 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
HOXD3P31249 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD3P31249 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
HOXD3P31249 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD3P31249 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC14.14□□□□□ -0.15
HOXD3P31249 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD3P31249 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD3P31249 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD3P31249 AL162741.1-201ENST00000565563 1558 ntBASIC14.13□□□□□ -0.15
HOXD3P31249 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
HOXD3P31249 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD3P31249 PBK-203ENST00000522944 1499 ntTSL 2 BASIC14.13□□□□□ -0.15
HOXD3P31249 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD3P31249 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD3P31249 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD3P31249 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD3P31249 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD3P31249 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC14.13□□□□□ -0.15
HOXD3P31249 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD3P31249 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
HOXD3P31249 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
HOXD3P31249 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD3P31249 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD3P31249 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
HOXD3P31249 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD3P31249 AC004870.1-201ENST00000315132 882 ntBASIC14.13□□□□□ -0.15
HOXD3P31249 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD3P31249 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD3P31249 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD3P31249 AP002383.4-201ENST00000442518 975 ntBASIC14.13□□□□□ -0.15
HOXD3P31249 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
HOXD3P31249 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC14.13□□□□□ -0.15
HOXD3P31249 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC14.13□□□□□ -0.15
HOXD3P31249 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC14.13□□□□□ -0.15
HOXD3P31249 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
HOXD3P31249 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
HOXD3P31249 SPEG-225ENST00000617028 815 ntTSL 5 BASIC14.13□□□□□ -0.15
HOXD3P31249 AL391807.1-203ENST00000604392 2365 ntBASIC14.13□□□□□ -0.15
HOXD3P31249 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC14.13□□□□□ -0.15
HOXD3P31249 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
HOXD3P31249 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC14.13□□□□□ -0.15
HOXD3P31249 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
HOXD3P31249 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD3P31249 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC14.13□□□□□ -0.15
HOXD3P31249 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC14.13□□□□□ -0.15
HOXD3P31249 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC14.12□□□□□ -0.15
HOXD3P31249 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC14.12□□□□□ -0.15
HOXD3P31249 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
HOXD3P31249 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC14.12□□□□□ -0.15
HOXD3P31249 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXD3P31249 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC14.12□□□□□ -0.15
HOXD3P31249 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
HOXD3P31249 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC14.12□□□□□ -0.15
HOXD3P31249 MCC-208ENST00000514701 2855 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXD3P31249 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
HOXD3P31249 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
HOXD3P31249 MIR149-201ENST00000384879 89 ntBASIC14.12□□□□□ -0.15
HOXD3P31249 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
HOXD3P31249 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
HOXD3P31249 PVRIG2P-201ENST00000435460 978 ntBASIC14.12□□□□□ -0.15
HOXD3P31249 UNC93B7-201ENST00000509439 705 ntBASIC14.12□□□□□ -0.15
HOXD3P31249 MIR3180-1-201ENST00000580374 94 ntBASIC14.12□□□□□ -0.15
HOXD3P31249 MIR3180-3-201ENST00000584616 94 ntBASIC14.12□□□□□ -0.15
HOXD3P31249 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXD3P31249 IL11-204ENST00000590625 1028 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXD3P31249 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC14.12□□□□□ -0.15
HOXD3P31249 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
HOXD3P31249 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXD3P31249 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
HOXD3P31249 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXD3P31249 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms