Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AL096828.2-201ENST00000567259 1965 ntBASIC18.4■□□□□ 0.54
VIMP08670 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VIMP08670 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VIMP08670 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.4■□□□□ 0.54
VIMP08670 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.4■□□□□ 0.54
VIMP08670 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
VIMP08670 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
VIMP08670 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.39■□□□□ 0.54
VIMP08670 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VIMP08670 AL118508.1-201ENST00000613502 2345 ntBASIC18.39■□□□□ 0.53
VIMP08670 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VIMP08670 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.39■□□□□ 0.53
VIMP08670 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VIMP08670 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.39■□□□□ 0.53
VIMP08670 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.39■□□□□ 0.53
VIMP08670 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.39■□□□□ 0.53
VIMP08670 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VIMP08670 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.39■□□□□ 0.53
VIMP08670 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VIMP08670 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VIMP08670 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
VIMP08670 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VIMP08670 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
VIMP08670 KRT8P32-201ENST00000512863 1461 ntBASIC18.39■□□□□ 0.53
VIMP08670 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.39■□□□□ 0.53
VIMP08670 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VIMP08670 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
VIMP08670 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VIMP08670 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VIMP08670 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VIMP08670 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VIMP08670 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.38■□□□□ 0.53
VIMP08670 LTF-203ENST00000426532 2494 ntTSL 2 BASIC18.38■□□□□ 0.53
VIMP08670 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.38■□□□□ 0.53
VIMP08670 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VIMP08670 AL160286.2-201ENST00000567150 934 ntBASIC18.38■□□□□ 0.53
VIMP08670 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.38■□□□□ 0.53
VIMP08670 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
VIMP08670 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
VIMP08670 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.38■□□□□ 0.53
VIMP08670 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC18.38■□□□□ 0.53
VIMP08670 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VIMP08670 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VIMP08670 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VIMP08670 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
VIMP08670 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VIMP08670 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VIMP08670 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VIMP08670 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VIMP08670 AC006116.8-202ENST00000587620 1550 ntBASIC18.38■□□□□ 0.53
VIMP08670 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VIMP08670 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VIMP08670 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VIMP08670 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VIMP08670 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
VIMP08670 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VIMP08670 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VIMP08670 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VIMP08670 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
VIMP08670 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VIMP08670 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
VIMP08670 AC007322.1-201ENST00000426983 750 ntBASIC18.37■□□□□ 0.53
VIMP08670 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VIMP08670 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.37■□□□□ 0.53
VIMP08670 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.37■□□□□ 0.53
VIMP08670 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.37■□□□□ 0.53
VIMP08670 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.37■□□□□ 0.53
VIMP08670 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
VIMP08670 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.37■□□□□ 0.53
VIMP08670 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VIMP08670 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VIMP08670 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VIMP08670 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
VIMP08670 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
VIMP08670 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
VIMP08670 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.37■□□□□ 0.53
VIMP08670 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
VIMP08670 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.37■□□□□ 0.53
VIMP08670 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VIMP08670 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VIMP08670 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VIMP08670 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VIMP08670 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VIMP08670 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VIMP08670 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VIMP08670 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VIMP08670 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VIMP08670 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VIMP08670 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VIMP08670 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.36■□□□□ 0.53
VIMP08670 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VIMP08670 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VIMP08670 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.36■□□□□ 0.53
VIMP08670 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VIMP08670 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
VIMP08670 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.36■□□□□ 0.53
VIMP08670 MYLKP1-201ENST00000509077 1580 ntBASIC18.36■□□□□ 0.53
VIMP08670 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VIMP08670 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
VIMP08670 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms