Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS4BO75351 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
VPS4BO75351 AL031985.4-201ENST00000642138 673 ntBASIC17.96■□□□□ 0.47
VPS4BO75351 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS4BO75351 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS4BO75351 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS4BO75351 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
VPS4BO75351 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS4BO75351 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS4BO75351 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS4BO75351 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS4BO75351 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
VPS4BO75351 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS4BO75351 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
VPS4BO75351 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.46
VPS4BO75351 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS4BO75351 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4BO75351 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4BO75351 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4BO75351 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4BO75351 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4BO75351 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4BO75351 GNAS-203ENST00000306120 1878 ntBASIC17.95■□□□□ 0.46
VPS4BO75351 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4BO75351 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
VPS4BO75351 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.95■□□□□ 0.46
VPS4BO75351 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.95■□□□□ 0.46
VPS4BO75351 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
VPS4BO75351 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4BO75351 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
VPS4BO75351 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4BO75351 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS4BO75351 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS4BO75351 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.95■□□□□ 0.46
VPS4BO75351 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS4BO75351 EGLN1P1-201ENST00000531623 762 ntBASIC17.95■□□□□ 0.46
VPS4BO75351 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4BO75351 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS4BO75351 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.95■□□□□ 0.46
VPS4BO75351 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4BO75351 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.95■□□□□ 0.46
VPS4BO75351 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
VPS4BO75351 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4BO75351 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.95■□□□□ 0.46
VPS4BO75351 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS4BO75351 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS4BO75351 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4BO75351 AC138028.4-201ENST00000564984 1845 ntBASIC17.95■□□□□ 0.46
VPS4BO75351 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4BO75351 AP000997.3-201ENST00000623333 2250 ntBASIC17.95■□□□□ 0.46
VPS4BO75351 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS4BO75351 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.95■□□□□ 0.46
VPS4BO75351 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.95■□□□□ 0.46
VPS4BO75351 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
VPS4BO75351 FSCN1P1-201ENST00000568912 1481 ntBASIC17.95■□□□□ 0.46
VPS4BO75351 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4BO75351 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4BO75351 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4BO75351 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4BO75351 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.94■□□□□ 0.46
VPS4BO75351 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
VPS4BO75351 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.94■□□□□ 0.46
VPS4BO75351 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4BO75351 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4BO75351 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4BO75351 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.94■□□□□ 0.46
VPS4BO75351 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.94■□□□□ 0.46
VPS4BO75351 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
VPS4BO75351 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.94■□□□□ 0.46
VPS4BO75351 ECEL1P2-202ENST00000465689 757 ntBASIC17.94■□□□□ 0.46
VPS4BO75351 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.94■□□□□ 0.46
VPS4BO75351 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
VPS4BO75351 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.94■□□□□ 0.46
VPS4BO75351 AC022616.7-201ENST00000525383 220 ntBASIC17.94■□□□□ 0.46
VPS4BO75351 KRT126P-201ENST00000549467 1181 ntBASIC17.94■□□□□ 0.46
VPS4BO75351 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.94■□□□□ 0.46
VPS4BO75351 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.94■□□□□ 0.46
VPS4BO75351 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.94■□□□□ 0.46
VPS4BO75351 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4BO75351 ESPNP-201ENST00000270691 2015 ntBASIC17.94■□□□□ 0.46
VPS4BO75351 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4BO75351 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
VPS4BO75351 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.94■□□□□ 0.46
VPS4BO75351 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4BO75351 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
VPS4BO75351 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
VPS4BO75351 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4BO75351 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4BO75351 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
VPS4BO75351 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4BO75351 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.93■□□□□ 0.46
VPS4BO75351 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4BO75351 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS4BO75351 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4BO75351 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
VPS4BO75351 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4BO75351 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4BO75351 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4BO75351 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4BO75351 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms