Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 LINC01568-207ENST00000641790 1380 ntBASIC16.18■□□□□ 0.18
SGCEO43556 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.18■□□□□ 0.18
SGCEO43556 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SGCEO43556 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.18■□□□□ 0.18
SGCEO43556 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.18■□□□□ 0.18
SGCEO43556 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.18■□□□□ 0.18
SGCEO43556 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
SGCEO43556 AL512604.3-201ENST00000569583 964 ntBASIC16.18■□□□□ 0.18
SGCEO43556 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC16.18■□□□□ 0.18
SGCEO43556 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.18■□□□□ 0.18
SGCEO43556 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.18■□□□□ 0.18
SGCEO43556 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.18■□□□□ 0.18
SGCEO43556 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
SGCEO43556 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.18■□□□□ 0.18
SGCEO43556 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SGCEO43556 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
SGCEO43556 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
SGCEO43556 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.17■□□□□ 0.18
SGCEO43556 AC135050.7-201ENST00000624508 2218 ntBASIC16.17■□□□□ 0.18
SGCEO43556 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.17■□□□□ 0.18
SGCEO43556 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 HMGA1P5-201ENST00000412453 271 ntBASIC16.17■□□□□ 0.18
SGCEO43556 ECEL1P2-202ENST00000465689 757 ntBASIC16.17■□□□□ 0.18
SGCEO43556 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
SGCEO43556 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.17■□□□□ 0.18
SGCEO43556 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.17■□□□□ 0.18
SGCEO43556 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.17■□□□□ 0.18
SGCEO43556 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.17■□□□□ 0.18
SGCEO43556 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.17■□□□□ 0.18
SGCEO43556 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 KRT18P22-201ENST00000402024 1347 ntBASIC16.17■□□□□ 0.18
SGCEO43556 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SGCEO43556 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.17■□□□□ 0.18
SGCEO43556 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.16■□□□□ 0.18
SGCEO43556 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.16■□□□□ 0.18
SGCEO43556 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
SGCEO43556 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 SNCG-201ENST00000348795 684 ntTSL 2 BASIC16.16■□□□□ 0.18
SGCEO43556 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
SGCEO43556 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.16■□□□□ 0.18
SGCEO43556 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC16.16■□□□□ 0.18
SGCEO43556 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.16■□□□□ 0.18
SGCEO43556 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.16■□□□□ 0.18
SGCEO43556 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
SGCEO43556 FAM87A-204ENST00000613235 858 ntBASIC16.16■□□□□ 0.18
SGCEO43556 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.16■□□□□ 0.18
SGCEO43556 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
SGCEO43556 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.16■□□□□ 0.18
SGCEO43556 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
SGCEO43556 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
SGCEO43556 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SGCEO43556 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC16.16■□□□□ 0.18
SGCEO43556 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SGCEO43556 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms