Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.11□□□□□ -0.15
COL6A5A8TX70 AL132655.2-201ENST00000596276 594 ntBASIC14.11□□□□□ -0.15
COL6A5A8TX70 AL589182.2-201ENST00000619332 1049 ntBASIC14.11□□□□□ -0.15
COL6A5A8TX70 AC009154.2-201ENST00000621177 724 ntBASIC14.11□□□□□ -0.15
COL6A5A8TX70 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A5A8TX70 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A5A8TX70 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC14.1□□□□□ -0.15
COL6A5A8TX70 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
COL6A5A8TX70 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
COL6A5A8TX70 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A5A8TX70 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A5A8TX70 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
COL6A5A8TX70 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A5A8TX70 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC14.1□□□□□ -0.15
COL6A5A8TX70 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A5A8TX70 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
COL6A5A8TX70 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.1□□□□□ -0.15
COL6A5A8TX70 FAM58CP-201ENST00000435741 640 ntBASIC14.1□□□□□ -0.15
COL6A5A8TX70 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC14.1□□□□□ -0.15
COL6A5A8TX70 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC14.1□□□□□ -0.15
COL6A5A8TX70 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC14.1□□□□□ -0.15
COL6A5A8TX70 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC14.1□□□□□ -0.15
COL6A5A8TX70 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC14.1□□□□□ -0.15
COL6A5A8TX70 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A5A8TX70 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC14.1□□□□□ -0.15
COL6A5A8TX70 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A5A8TX70 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A5A8TX70 AL121761.2-201ENST00000598007 1648 ntBASIC14.1□□□□□ -0.15
COL6A5A8TX70 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC14.1□□□□□ -0.15
COL6A5A8TX70 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A5A8TX70 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A5A8TX70 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A5A8TX70 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
COL6A5A8TX70 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC14.1□□□□□ -0.15
COL6A5A8TX70 NABP1-203ENST00000409510 843 ntTSL 5 BASIC14.1□□□□□ -0.15
COL6A5A8TX70 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC14.1□□□□□ -0.15
COL6A5A8TX70 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A5A8TX70 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
COL6A5A8TX70 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A5A8TX70 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC14.09□□□□□ -0.15
COL6A5A8TX70 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
COL6A5A8TX70 LSR-203ENST00000360798 1963 ntTSL 2 BASIC14.09□□□□□ -0.15
COL6A5A8TX70 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A5A8TX70 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A5A8TX70 DDT-204ENST00000404092 805 ntTSL 3 BASIC14.09□□□□□ -0.15
COL6A5A8TX70 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
COL6A5A8TX70 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A5A8TX70 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A5A8TX70 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A5A8TX70 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.09□□□□□ -0.15
COL6A5A8TX70 KATNBL1P6-202ENST00000562413 1466 ntBASIC14.09□□□□□ -0.15
COL6A5A8TX70 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC14.09□□□□□ -0.15
COL6A5A8TX70 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A5A8TX70 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A5A8TX70 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.09□□□□□ -0.15
COL6A5A8TX70 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.09□□□□□ -0.15
COL6A5A8TX70 BX005266.1-201ENST00000473402 457 ntBASIC14.09□□□□□ -0.15
COL6A5A8TX70 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC14.09□□□□□ -0.15
COL6A5A8TX70 AL022326.1-202ENST00000641533 845 ntBASIC14.09□□□□□ -0.15
COL6A5A8TX70 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL6A5A8TX70 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
COL6A5A8TX70 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL6A5A8TX70 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
COL6A5A8TX70 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
COL6A5A8TX70 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
COL6A5A8TX70 AC026310.3-201ENST00000625186 2373 ntBASIC14.08□□□□□ -0.15
COL6A5A8TX70 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A5A8TX70 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC14.08□□□□□ -0.16
COL6A5A8TX70 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A5A8TX70 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A5A8TX70 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
COL6A5A8TX70 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC14.08□□□□□ -0.16
COL6A5A8TX70 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC14.08□□□□□ -0.16
COL6A5A8TX70 AC004877.2-201ENST00000623941 599 ntBASIC14.08□□□□□ -0.16
COL6A5A8TX70 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC14.08□□□□□ -0.16
COL6A5A8TX70 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A5A8TX70 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A5A8TX70 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC14.08□□□□□ -0.16
COL6A5A8TX70 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
COL6A5A8TX70 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A5A8TX70 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
COL6A5A8TX70 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A5A8TX70 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
COL6A5A8TX70 AC079776.2-201ENST00000641154 1609 ntBASIC14.08□□□□□ -0.16
COL6A5A8TX70 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A5A8TX70 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A5A8TX70 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A5A8TX70 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A5A8TX70 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A5A8TX70 CD9-202ENST00000382515 1229 ntTSL 5 BASIC14.08□□□□□ -0.16
COL6A5A8TX70 CNN2P2-201ENST00000443536 909 ntBASIC14.08□□□□□ -0.16
COL6A5A8TX70 CNN2P3-201ENST00000450201 906 ntBASIC14.08□□□□□ -0.16
COL6A5A8TX70 PARP8-206ENST00000503665 572 ntTSL 4 BASIC14.08□□□□□ -0.16
COL6A5A8TX70 AL136317.3-201ENST00000618497 906 ntBASIC14.08□□□□□ -0.16
COL6A5A8TX70 AC091812.2-201ENST00000619081 385 ntBASIC14.08□□□□□ -0.16
COL6A5A8TX70 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC14.08□□□□□ -0.16
COL6A5A8TX70 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A5A8TX70 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A5A8TX70 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
COL6A5A8TX70 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms