Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.56■□□□□ 0.72
SMIM28A0A1B0GU29 NSUN5P1-202ENST00000421140 1535 ntBASIC19.56■□□□□ 0.72
SMIM28A0A1B0GU29 NSUN5P2-203ENST00000457352 1529 ntBASIC19.56■□□□□ 0.72
SMIM28A0A1B0GU29 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMIM28A0A1B0GU29 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMIM28A0A1B0GU29 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 AC099336.1-202ENST00000602961 463 ntBASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 AL732292.2-201ENST00000609649 430 ntBASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 AL691432.3-201ENST00000621860 400 ntBASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMIM28A0A1B0GU29 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 WIZP1-201ENST00000531444 2299 ntBASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 AL121772.3-201ENST00000610840 674 ntBASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 AC087289.5-201ENST00000586076 3175 ntBASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
SMIM28A0A1B0GU29 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 TPM4P1-201ENST00000436100 807 ntBASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 KRT18P31-201ENST00000506277 1292 ntBASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 AC091304.2-201ENST00000564639 760 ntBASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 RN7SL510P-201ENST00000581311 263 ntBASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 AC138894.3-201ENST00000603787 634 ntBASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.53■□□□□ 0.72
SMIM28A0A1B0GU29 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms