Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 AC099398.1-201ENST00000567919 2776 ntBASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 KRT16P5-201ENST00000455284 522 ntBASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 AC026366.1-201ENST00000488803 879 ntBASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 AC131212.4-201ENST00000623606 975 ntBASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 MYC-208ENST00000641036 567 ntBASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CHMP1AQ9HD42 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 KLF13-207ENST00000560473 489 ntTSL 3 BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CHMP1AQ9HD42 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CHMP1AQ9HD42 AL162741.1-201ENST00000565563 1558 ntBASIC15.77■□□□□ 0.11
CHMP1AQ9HD42 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CHMP1AQ9HD42 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
CHMP1AQ9HD42 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
CHMP1AQ9HD42 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CHMP1AQ9HD42 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
CHMP1AQ9HD42 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CHMP1AQ9HD42 AC009053.2-201ENST00000563701 2365 ntBASIC15.77■□□□□ 0.11
CHMP1AQ9HD42 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CHMP1AQ9HD42 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CHMP1AQ9HD42 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
CHMP1AQ9HD42 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CHMP1AQ9HD42 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
CHMP1AQ9HD42 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
CHMP1AQ9HD42 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.11
CHMP1AQ9HD42 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 HLA-L-209ENST00000420110 1011 ntBASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms