Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 AC010240.3-201ENST00000607688 395 ntBASIC20.66■□□□□ 0.9
CCDC43Q96MW1 CYP51A1P1-201ENST00000492267 1507 ntBASIC20.66■□□□□ 0.9
CCDC43Q96MW1 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 LETM1P2-201ENST00000597330 2178 ntBASIC20.66■□□□□ 0.9
CCDC43Q96MW1 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC43Q96MW1 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 AC112777.1-201ENST00000540175 1423 ntBASIC20.65■□□□□ 0.9
CCDC43Q96MW1 ARMC10P1-201ENST00000313754 855 ntBASIC20.65■□□□□ 0.9
CCDC43Q96MW1 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 STARP1-201ENST00000397973 869 ntBASIC20.65■□□□□ 0.9
CCDC43Q96MW1 FAM8A6P-201ENST00000407496 1135 ntBASIC20.65■□□□□ 0.9
CCDC43Q96MW1 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 AC104390.1-201ENST00000555663 520 ntBASIC20.65■□□□□ 0.9
CCDC43Q96MW1 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC43Q96MW1 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.64■□□□□ 0.9
CCDC43Q96MW1 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC43Q96MW1 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC43Q96MW1 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.64■□□□□ 0.9
CCDC43Q96MW1 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.64■□□□□ 0.9
CCDC43Q96MW1 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC43Q96MW1 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.64■□□□□ 0.9
CCDC43Q96MW1 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.64■□□□□ 0.9
CCDC43Q96MW1 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 RASA4DP-201ENST00000460726 1199 ntBASIC20.64■□□□□ 0.89
CCDC43Q96MW1 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 KRT18P35-201ENST00000510488 1269 ntBASIC20.64■□□□□ 0.89
CCDC43Q96MW1 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC43Q96MW1 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC43Q96MW1 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
CCDC43Q96MW1 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC43Q96MW1 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC43Q96MW1 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
CCDC43Q96MW1 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC43Q96MW1 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CCDC43Q96MW1 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC43Q96MW1 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC43Q96MW1 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC43Q96MW1 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CCDC43Q96MW1 SPDYE15P-201ENST00000424157 909 ntBASIC20.63■□□□□ 0.89
CCDC43Q96MW1 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.63■□□□□ 0.89
CCDC43Q96MW1 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.63■□□□□ 0.89
CCDC43Q96MW1 MIR3917-201ENST00000580971 93 ntBASIC20.63■□□□□ 0.89
CCDC43Q96MW1 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CCDC43Q96MW1 AL445228.2-201ENST00000605589 952 ntBASIC20.63■□□□□ 0.89
CCDC43Q96MW1 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC43Q96MW1 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CCDC43Q96MW1 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC43Q96MW1 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms