Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
VPS50Q96JG6 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS50Q96JG6 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS50Q96JG6 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS50Q96JG6 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
VPS50Q96JG6 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
VPS50Q96JG6 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS50Q96JG6 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS50Q96JG6 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.93■□□□□ 0.46
VPS50Q96JG6 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.93■□□□□ 0.46
VPS50Q96JG6 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS50Q96JG6 CKBP1-201ENST00000565489 1086 ntBASIC17.93■□□□□ 0.46
VPS50Q96JG6 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
VPS50Q96JG6 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS50Q96JG6 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS50Q96JG6 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS50Q96JG6 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS50Q96JG6 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS50Q96JG6 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS50Q96JG6 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS50Q96JG6 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS50Q96JG6 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS50Q96JG6 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS50Q96JG6 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS50Q96JG6 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS50Q96JG6 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS50Q96JG6 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.93■□□□□ 0.46
VPS50Q96JG6 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 ARMC10P1-201ENST00000313754 855 ntBASIC17.92■□□□□ 0.46
VPS50Q96JG6 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 AL031432.5-201ENST00000641059 760 ntBASIC17.92■□□□□ 0.46
VPS50Q96JG6 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS50Q96JG6 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS50Q96JG6 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS50Q96JG6 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS50Q96JG6 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS50Q96JG6 AC099398.1-201ENST00000567919 2776 ntBASIC17.91■□□□□ 0.46
VPS50Q96JG6 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS50Q96JG6 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS50Q96JG6 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 AL353719.1-201ENST00000566847 864 ntBASIC17.91■□□□□ 0.46
VPS50Q96JG6 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS50Q96JG6 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS50Q96JG6 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS50Q96JG6 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS50Q96JG6 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS50Q96JG6 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS50Q96JG6 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS50Q96JG6 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS50Q96JG6 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
VPS50Q96JG6 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms