Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.48■□□□□ 0.55
TTC28Q96AY4 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.48■□□□□ 0.55
TTC28Q96AY4 AL512356.2-201ENST00000546955 174 ntBASIC18.48■□□□□ 0.55
TTC28Q96AY4 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.48■□□□□ 0.55
TTC28Q96AY4 AC079776.2-201ENST00000641154 1609 ntBASIC18.48■□□□□ 0.55
TTC28Q96AY4 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.47■□□□□ 0.55
TTC28Q96AY4 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.47■□□□□ 0.55
TTC28Q96AY4 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC18.47■□□□□ 0.55
TTC28Q96AY4 AC107890.1-201ENST00000422478 521 ntBASIC18.47■□□□□ 0.55
TTC28Q96AY4 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC18.47■□□□□ 0.55
TTC28Q96AY4 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC18.47■□□□□ 0.55
TTC28Q96AY4 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.47■□□□□ 0.55
TTC28Q96AY4 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.47■□□□□ 0.55
TTC28Q96AY4 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
TTC28Q96AY4 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TTC28Q96AY4 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TTC28Q96AY4 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TTC28Q96AY4 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TTC28Q96AY4 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TTC28Q96AY4 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TTC28Q96AY4 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.47■□□□□ 0.55
TTC28Q96AY4 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
TTC28Q96AY4 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TTC28Q96AY4 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TTC28Q96AY4 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC18.47■□□□□ 0.55
TTC28Q96AY4 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TTC28Q96AY4 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC18.47■□□□□ 0.55
TTC28Q96AY4 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.47■□□□□ 0.55
TTC28Q96AY4 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.47■□□□□ 0.55
TTC28Q96AY4 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.47■□□□□ 0.55
TTC28Q96AY4 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TTC28Q96AY4 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TTC28Q96AY4 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TTC28Q96AY4 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TTC28Q96AY4 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.47■□□□□ 0.55
TTC28Q96AY4 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.47■□□□□ 0.55
TTC28Q96AY4 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TTC28Q96AY4 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.46■□□□□ 0.55
TTC28Q96AY4 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TTC28Q96AY4 LINC01126-201ENST00000623515 1646 ntBASIC18.46■□□□□ 0.55
TTC28Q96AY4 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TTC28Q96AY4 CALY-202ENST00000368555 783 ntTSL 2 BASIC18.46■□□□□ 0.55
TTC28Q96AY4 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.46■□□□□ 0.55
TTC28Q96AY4 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
TTC28Q96AY4 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TTC28Q96AY4 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18.46■□□□□ 0.55
TTC28Q96AY4 ACA64.2-201ENST00000459014 129 ntBASIC18.46■□□□□ 0.55
TTC28Q96AY4 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.46■□□□□ 0.55
TTC28Q96AY4 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.46■□□□□ 0.55
TTC28Q96AY4 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.46■□□□□ 0.55
TTC28Q96AY4 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TTC28Q96AY4 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TTC28Q96AY4 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TTC28Q96AY4 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.46■□□□□ 0.55
TTC28Q96AY4 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.46■□□□□ 0.55
TTC28Q96AY4 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.46■□□□□ 0.55
TTC28Q96AY4 AC009093.7-201ENST00000623853 1223 ntBASIC18.46■□□□□ 0.55
TTC28Q96AY4 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TTC28Q96AY4 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.46■□□□□ 0.55
TTC28Q96AY4 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TTC28Q96AY4 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TTC28Q96AY4 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.45■□□□□ 0.54
TTC28Q96AY4 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TTC28Q96AY4 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.45■□□□□ 0.54
TTC28Q96AY4 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TTC28Q96AY4 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.45■□□□□ 0.54
TTC28Q96AY4 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.45■□□□□ 0.54
TTC28Q96AY4 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.45■□□□□ 0.54
TTC28Q96AY4 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TTC28Q96AY4 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.45■□□□□ 0.54
TTC28Q96AY4 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
TTC28Q96AY4 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TTC28Q96AY4 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TTC28Q96AY4 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.45■□□□□ 0.54
TTC28Q96AY4 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TTC28Q96AY4 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TTC28Q96AY4 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
TTC28Q96AY4 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TTC28Q96AY4 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TTC28Q96AY4 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.45■□□□□ 0.54
TTC28Q96AY4 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.45■□□□□ 0.54
TTC28Q96AY4 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC18.45■□□□□ 0.54
TTC28Q96AY4 MIR4751-201ENST00000578027 74 ntBASIC18.45■□□□□ 0.54
TTC28Q96AY4 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.45■□□□□ 0.54
TTC28Q96AY4 AC010654.1-201ENST00000615722 808 ntBASIC18.45■□□□□ 0.54
TTC28Q96AY4 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TTC28Q96AY4 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TTC28Q96AY4 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TTC28Q96AY4 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TTC28Q96AY4 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TTC28Q96AY4 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.44■□□□□ 0.54
TTC28Q96AY4 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TTC28Q96AY4 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC18.44■□□□□ 0.54
TTC28Q96AY4 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TTC28Q96AY4 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.44■□□□□ 0.54
TTC28Q96AY4 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TTC28Q96AY4 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TTC28Q96AY4 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TTC28Q96AY4 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TTC28Q96AY4 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms