Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.79■□□□□ 0.92
ERCC4Q92889 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.79■□□□□ 0.92
ERCC4Q92889 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
ERCC4Q92889 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.79■□□□□ 0.92
ERCC4Q92889 CD177P1-201ENST00000606252 935 ntBASIC20.79■□□□□ 0.92
ERCC4Q92889 LINC00896-202ENST00000609602 2128 ntBASIC20.79■□□□□ 0.92
ERCC4Q92889 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC4Q92889 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC4Q92889 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.79■□□□□ 0.92
ERCC4Q92889 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC4Q92889 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.79■□□□□ 0.92
ERCC4Q92889 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC4Q92889 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC4Q92889 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
ERCC4Q92889 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC4Q92889 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC4Q92889 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.78■□□□□ 0.92
ERCC4Q92889 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC4Q92889 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.78■□□□□ 0.92
ERCC4Q92889 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
ERCC4Q92889 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC4Q92889 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC4Q92889 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC4Q92889 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC4Q92889 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC4Q92889 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC4Q92889 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC4Q92889 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.78■□□□□ 0.92
ERCC4Q92889 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
ERCC4Q92889 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.78■□□□□ 0.92
ERCC4Q92889 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.78■□□□□ 0.92
ERCC4Q92889 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
ERCC4Q92889 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC4Q92889 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC4Q92889 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.78■□□□□ 0.92
ERCC4Q92889 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC4Q92889 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC20.78■□□□□ 0.92
ERCC4Q92889 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC4Q92889 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC4Q92889 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC4Q92889 HTR7P1-202ENST00000624664 4411 ntBASIC20.77■□□□□ 0.92
ERCC4Q92889 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC20.77■□□□□ 0.92
ERCC4Q92889 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC4Q92889 PRORSD1P-201ENST00000295112 541 ntBASIC20.77■□□□□ 0.92
ERCC4Q92889 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
ERCC4Q92889 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.77■□□□□ 0.92
ERCC4Q92889 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.77■□□□□ 0.92
ERCC4Q92889 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.77■□□□□ 0.92
ERCC4Q92889 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.77■□□□□ 0.92
ERCC4Q92889 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
ERCC4Q92889 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC4Q92889 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.77■□□□□ 0.92
ERCC4Q92889 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC4Q92889 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
ERCC4Q92889 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
ERCC4Q92889 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC4Q92889 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC4Q92889 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
ERCC4Q92889 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.76■□□□□ 0.91
ERCC4Q92889 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
ERCC4Q92889 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC4Q92889 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC4Q92889 FSCN1P1-201ENST00000568912 1481 ntBASIC20.76■□□□□ 0.91
ERCC4Q92889 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC4Q92889 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.76■□□□□ 0.91
ERCC4Q92889 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC20.76■□□□□ 0.91
ERCC4Q92889 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC4Q92889 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.76■□□□□ 0.91
ERCC4Q92889 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.76■□□□□ 0.91
ERCC4Q92889 AC098590.1-201ENST00000468126 897 ntBASIC20.76■□□□□ 0.91
ERCC4Q92889 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.76■□□□□ 0.91
ERCC4Q92889 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.76■□□□□ 0.91
ERCC4Q92889 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.76■□□□□ 0.91
ERCC4Q92889 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.76■□□□□ 0.91
ERCC4Q92889 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.76■□□□□ 0.91
ERCC4Q92889 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.76■□□□□ 0.91
ERCC4Q92889 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.76■□□□□ 0.91
ERCC4Q92889 SLC25A1P4-201ENST00000567977 778 ntBASIC20.76■□□□□ 0.91
ERCC4Q92889 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC4Q92889 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC4Q92889 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC4Q92889 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
ERCC4Q92889 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.76■□□□□ 0.91
ERCC4Q92889 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.76■□□□□ 0.91
ERCC4Q92889 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC4Q92889 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC4Q92889 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC4Q92889 AL096828.2-201ENST00000567259 1965 ntBASIC20.76■□□□□ 0.91
ERCC4Q92889 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.75■□□□□ 0.91
ERCC4Q92889 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC4Q92889 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
ERCC4Q92889 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC4Q92889 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.75■□□□□ 0.91
ERCC4Q92889 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC4Q92889 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
ERCC4Q92889 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC4Q92889 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC4Q92889 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC4Q92889 FAM201B-201ENST00000458407 597 ntBASIC20.75■□□□□ 0.91
ERCC4Q92889 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms