Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 FLJ13224-201ENST00000313737 1514 ntBASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 KRT8P20-201ENST00000423953 1409 ntBASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 AC131281.2-201ENST00000520478 145 ntBASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 POR-209ENST00000439269 1858 ntTSL 2 BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 AC007322.3-201ENST00000426526 701 ntBASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 AL138724.1-201ENST00000606771 1088 ntBASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 SF1-220ENST00000626028 704 ntTSL 2 BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC14.61□□□□□ -0.07
CLRN3Q8NCR9 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 AC104640.1-201ENST00000562617 2109 ntBASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 AL136116.3-201ENST00000402907 1138 ntBASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 SLC47A1P1-202ENST00000449666 945 ntBASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 QDPR-206ENST00000508623 601 ntTSL 3 BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms