Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.43■□□□□ 0.86
USP38Q8NB14 AL121772.3-201ENST00000610840 674 ntBASIC20.43■□□□□ 0.86
USP38Q8NB14 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.43■□□□□ 0.86
USP38Q8NB14 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP38Q8NB14 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
USP38Q8NB14 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP38Q8NB14 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP38Q8NB14 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP38Q8NB14 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP38Q8NB14 AC141586.3-201ENST00000562166 1838 ntBASIC20.43■□□□□ 0.86
USP38Q8NB14 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP38Q8NB14 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
USP38Q8NB14 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP38Q8NB14 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP38Q8NB14 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP38Q8NB14 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP38Q8NB14 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
USP38Q8NB14 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
USP38Q8NB14 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.42■□□□□ 0.86
USP38Q8NB14 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.42■□□□□ 0.86
USP38Q8NB14 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
USP38Q8NB14 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
USP38Q8NB14 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.42■□□□□ 0.86
USP38Q8NB14 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.42■□□□□ 0.86
USP38Q8NB14 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 KRT18P31-201ENST00000506277 1292 ntBASIC20.42■□□□□ 0.86
USP38Q8NB14 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC20.42■□□□□ 0.86
USP38Q8NB14 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.42■□□□□ 0.86
USP38Q8NB14 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.42■□□□□ 0.86
USP38Q8NB14 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.42■□□□□ 0.86
USP38Q8NB14 AL121912.1-201ENST00000603683 238 ntBASIC20.42■□□□□ 0.86
USP38Q8NB14 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.42■□□□□ 0.86
USP38Q8NB14 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
USP38Q8NB14 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
USP38Q8NB14 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.42■□□□□ 0.86
USP38Q8NB14 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 AC034236.2-201ENST00000606662 1610 ntBASIC20.42■□□□□ 0.86
USP38Q8NB14 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
USP38Q8NB14 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP38Q8NB14 AC007613.1-201ENST00000572811 2597 ntBASIC20.41■□□□□ 0.86
USP38Q8NB14 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
USP38Q8NB14 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.41■□□□□ 0.86
USP38Q8NB14 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP38Q8NB14 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP38Q8NB14 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
USP38Q8NB14 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
USP38Q8NB14 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP38Q8NB14 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP38Q8NB14 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP38Q8NB14 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP38Q8NB14 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC20.41■□□□□ 0.86
USP38Q8NB14 TSPY22P-201ENST00000427496 604 ntBASIC20.41■□□□□ 0.86
USP38Q8NB14 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC20.41■□□□□ 0.86
USP38Q8NB14 SLC25A1P1-201ENST00000528351 927 ntBASIC20.41■□□□□ 0.86
USP38Q8NB14 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.41■□□□□ 0.86
USP38Q8NB14 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.41■□□□□ 0.86
USP38Q8NB14 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
USP38Q8NB14 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP38Q8NB14 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP38Q8NB14 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
USP38Q8NB14 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP38Q8NB14 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP38Q8NB14 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP38Q8NB14 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP38Q8NB14 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
USP38Q8NB14 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.41■□□□□ 0.86
USP38Q8NB14 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
USP38Q8NB14 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP38Q8NB14 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USP38Q8NB14 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP38Q8NB14 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP38Q8NB14 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP38Q8NB14 BAALC-202ENST00000306391 243 ntTSL 5 BASIC20.4■□□□□ 0.86
USP38Q8NB14 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USP38Q8NB14 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USP38Q8NB14 BAALC-204ENST00000330955 222 ntTSL 5 BASIC20.4■□□□□ 0.86
USP38Q8NB14 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.4■□□□□ 0.86
USP38Q8NB14 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
USP38Q8NB14 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USP38Q8NB14 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USP38Q8NB14 AC005082.1-201ENST00000413042 2259 ntBASIC20.4■□□□□ 0.86
USP38Q8NB14 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.4■□□□□ 0.86
USP38Q8NB14 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms