Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 AC092364.2-202ENST00000597012 1073 ntBASIC19.34■□□□□ 0.69
CHD9Q3L8U1 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHD9Q3L8U1 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.33■□□□□ 0.69
CHD9Q3L8U1 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC19.33■□□□□ 0.69
CHD9Q3L8U1 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CHD9Q3L8U1 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
CHD9Q3L8U1 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHD9Q3L8U1 AC093028.1-201ENST00000622998 982 ntBASIC19.33■□□□□ 0.69
CHD9Q3L8U1 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CHD9Q3L8U1 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHD9Q3L8U1 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CHD9Q3L8U1 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHD9Q3L8U1 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.33■□□□□ 0.68
CHD9Q3L8U1 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CHD9Q3L8U1 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.33■□□□□ 0.68
CHD9Q3L8U1 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHD9Q3L8U1 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
CHD9Q3L8U1 MIR149-201ENST00000384879 89 ntBASIC19.33■□□□□ 0.68
CHD9Q3L8U1 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHD9Q3L8U1 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CHD9Q3L8U1 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC19.33■□□□□ 0.68
CHD9Q3L8U1 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC19.33■□□□□ 0.68
CHD9Q3L8U1 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.33■□□□□ 0.68
CHD9Q3L8U1 PMPCAP1-201ENST00000508114 1576 ntBASIC19.33■□□□□ 0.68
CHD9Q3L8U1 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 FEM1AP3-201ENST00000403722 1741 ntBASIC19.32■□□□□ 0.68
CHD9Q3L8U1 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 AC009154.2-201ENST00000621177 724 ntBASIC19.32■□□□□ 0.68
CHD9Q3L8U1 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 HEIH-201ENST00000623091 1652 ntBASIC19.32■□□□□ 0.68
CHD9Q3L8U1 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 ELL2P1-201ENST00000413990 1906 ntBASIC19.32■□□□□ 0.68
CHD9Q3L8U1 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHD9Q3L8U1 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 WDR53-203ENST00000429115 683 ntTSL 2 BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 SNHG9-202ENST00000564014 471 ntBASIC19.31■□□□□ 0.68
CHD9Q3L8U1 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 AC012645.4-201ENST00000610691 1061 ntBASIC19.31■□□□□ 0.68
CHD9Q3L8U1 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 SDCCAG3P1-201ENST00000589292 1150 ntBASIC19.31■□□□□ 0.68
CHD9Q3L8U1 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
CHD9Q3L8U1 SYS1-203ENST00000414310 795 ntTSL 3 BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHD9Q3L8U1 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms