Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SF3A1Q15459 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SF3A1Q15459 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SF3A1Q15459 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC21.17■□□□□ 0.98
SF3A1Q15459 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SF3A1Q15459 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SF3A1Q15459 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SF3A1Q15459 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SF3A1Q15459 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
SF3A1Q15459 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
SF3A1Q15459 AL390955.1-201ENST00000428694 934 ntBASIC21.17■□□□□ 0.98
SF3A1Q15459 MIR4785-201ENST00000585005 73 ntBASIC21.17■□□□□ 0.98
SF3A1Q15459 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.17■□□□□ 0.98
SF3A1Q15459 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SF3A1Q15459 AL023803.3-201ENST00000615559 522 ntBASIC21.17■□□□□ 0.98
SF3A1Q15459 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SF3A1Q15459 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SF3A1Q15459 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SF3A1Q15459 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC21.17■□□□□ 0.98
SF3A1Q15459 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SF3A1Q15459 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
SF3A1Q15459 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC21.17■□□□□ 0.98
SF3A1Q15459 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SF3A1Q15459 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SF3A1Q15459 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SF3A1Q15459 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SF3A1Q15459 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC21.17■□□□□ 0.98
SF3A1Q15459 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SF3A1Q15459 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SF3A1Q15459 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SF3A1Q15459 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SF3A1Q15459 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SF3A1Q15459 ESPNP-201ENST00000270691 2015 ntBASIC21.16■□□□□ 0.98
SF3A1Q15459 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC21.16■□□□□ 0.98
SF3A1Q15459 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SF3A1Q15459 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21.16■□□□□ 0.98
SF3A1Q15459 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SF3A1Q15459 AC034236.2-201ENST00000606662 1610 ntBASIC21.16■□□□□ 0.98
SF3A1Q15459 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SF3A1Q15459 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SF3A1Q15459 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SF3A1Q15459 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
SF3A1Q15459 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SF3A1Q15459 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.16■□□□□ 0.98
SF3A1Q15459 SNORA78-201ENST00000459373 127 ntBASIC21.16■□□□□ 0.98
SF3A1Q15459 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
SF3A1Q15459 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21.16■□□□□ 0.98
SF3A1Q15459 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.16■□□□□ 0.98
SF3A1Q15459 MIR3180-5-201ENST00000583743 153 ntBASIC21.16■□□□□ 0.98
SF3A1Q15459 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
SF3A1Q15459 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SF3A1Q15459 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SF3A1Q15459 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SF3A1Q15459 AC099343.3-201ENST00000605834 2503 ntBASIC21.16■□□□□ 0.98
SF3A1Q15459 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SF3A1Q15459 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC21.15■□□□□ 0.98
SF3A1Q15459 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.15■□□□□ 0.98
SF3A1Q15459 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
SF3A1Q15459 PCDHB18P-201ENST00000524813 2368 ntBASIC21.15■□□□□ 0.98
SF3A1Q15459 KRT8P50-201ENST00000562022 1438 ntBASIC21.15■□□□□ 0.98
SF3A1Q15459 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.15■□□□□ 0.98
SF3A1Q15459 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
SF3A1Q15459 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.15■□□□□ 0.98
SF3A1Q15459 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SF3A1Q15459 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
SF3A1Q15459 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
SF3A1Q15459 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SF3A1Q15459 AC036111.1-201ENST00000533973 1582 ntBASIC21.14■□□□□ 0.98
SF3A1Q15459 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
SF3A1Q15459 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SF3A1Q15459 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
SF3A1Q15459 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SF3A1Q15459 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.98
SF3A1Q15459 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.14■□□□□ 0.98
SF3A1Q15459 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
SF3A1Q15459 AC093677.2-201ENST00000600169 1863 ntBASIC21.14■□□□□ 0.97
SF3A1Q15459 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SF3A1Q15459 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SF3A1Q15459 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SF3A1Q15459 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC21.14■□□□□ 0.97
SF3A1Q15459 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC21.14■□□□□ 0.97
SF3A1Q15459 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms