Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.23■□□□□ 0.35
FOXC1Q12948 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.23■□□□□ 0.35
FOXC1Q12948 AP000867.4-201ENST00000641616 219 ntBASIC17.23■□□□□ 0.35
FOXC1Q12948 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC1Q12948 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC1Q12948 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC1Q12948 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.23■□□□□ 0.35
FOXC1Q12948 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC1Q12948 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.23■□□□□ 0.35
FOXC1Q12948 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXC1Q12948 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.23■□□□□ 0.35
FOXC1Q12948 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
FOXC1Q12948 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC1Q12948 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXC1Q12948 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC1Q12948 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.22■□□□□ 0.35
FOXC1Q12948 AL163051.1-201ENST00000569214 1512 ntBASIC17.22■□□□□ 0.35
FOXC1Q12948 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.22■□□□□ 0.35
FOXC1Q12948 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC1Q12948 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC1Q12948 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
FOXC1Q12948 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC17.22■□□□□ 0.35
FOXC1Q12948 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC1Q12948 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC1Q12948 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC1Q12948 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.22■□□□□ 0.35
FOXC1Q12948 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.22■□□□□ 0.35
FOXC1Q12948 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXC1Q12948 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXC1Q12948 AC136632.2-201ENST00000512891 861 ntBASIC17.22■□□□□ 0.35
FOXC1Q12948 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC1Q12948 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC1Q12948 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.22■□□□□ 0.35
FOXC1Q12948 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXC1Q12948 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.22■□□□□ 0.35
FOXC1Q12948 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.22■□□□□ 0.35
FOXC1Q12948 MIR4751-201ENST00000578027 74 ntBASIC17.22■□□□□ 0.35
FOXC1Q12948 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.22■□□□□ 0.35
FOXC1Q12948 AC009154.2-201ENST00000621177 724 ntBASIC17.22■□□□□ 0.35
FOXC1Q12948 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXC1Q12948 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
FOXC1Q12948 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC1Q12948 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXC1Q12948 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC1Q12948 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXC1Q12948 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
FOXC1Q12948 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
FOXC1Q12948 STK25-234ENST00000535007 2459 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXC1Q12948 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.21■□□□□ 0.35
FOXC1Q12948 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.21■□□□□ 0.35
FOXC1Q12948 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
FOXC1Q12948 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
FOXC1Q12948 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
FOXC1Q12948 GPR89P-201ENST00000407924 1495 ntBASIC17.21■□□□□ 0.35
FOXC1Q12948 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
FOXC1Q12948 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.21■□□□□ 0.35
FOXC1Q12948 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 KRT18P27-201ENST00000427733 1299 ntBASIC17.21■□□□□ 0.35
FOXC1Q12948 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.21■□□□□ 0.35
FOXC1Q12948 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.21■□□□□ 0.35
FOXC1Q12948 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
FOXC1Q12948 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
FOXC1Q12948 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
FOXC1Q12948 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC17.21■□□□□ 0.35
FOXC1Q12948 AL022326.1-202ENST00000641533 845 ntBASIC17.21■□□□□ 0.35
FOXC1Q12948 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 MED17-221ENST00000639724 2317 ntTSL 5 BASIC17.21■□□□□ 0.35
FOXC1Q12948 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.21■□□□□ 0.35
FOXC1Q12948 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXC1Q12948 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
FOXC1Q12948 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.2■□□□□ 0.34
FOXC1Q12948 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXC1Q12948 GK-202ENST00000378941 458 ntTSL 3 BASIC17.2■□□□□ 0.34
FOXC1Q12948 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.2■□□□□ 0.34
FOXC1Q12948 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.2■□□□□ 0.34
FOXC1Q12948 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.2■□□□□ 0.34
FOXC1Q12948 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXC1Q12948 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.2■□□□□ 0.34
FOXC1Q12948 AC069262.1-201ENST00000539058 672 ntBASIC17.2■□□□□ 0.34
FOXC1Q12948 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.2■□□□□ 0.34
FOXC1Q12948 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.2■□□□□ 0.34
FOXC1Q12948 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.2■□□□□ 0.34
FOXC1Q12948 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.2■□□□□ 0.34
FOXC1Q12948 AF228730.6-201ENST00000641497 218 ntBASIC17.2■□□□□ 0.34
FOXC1Q12948 AC084121.3-201ENST00000641716 218 ntBASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms